Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15e15
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 159 3e-40
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 136 4e-33
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 134 1e-32
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 117 2e-27
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 97 2e-21
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 97 2e-21
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 96 5e-21
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 93 3e-20
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 83 3e-17
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 38 0.002
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 35 0.011
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 32 0.076
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 32 0.076
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 31 0.17
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.6
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 3.8
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 3.8
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 25 8.7
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 159 bits (387), Expect = 3e-40
Identities = 85/182 (46%), Positives = 118/182 (64%)
Frame = -3
Query: 716 LDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXI 537
+DGV++ + +N RKQ+ +V QEP L+ T+ ENI G S+ + +E I
Sbjct: 1180 VDGVNV-RDYNINDYRKQIALVSQEPTLYQGTVRENIVLGA-SKDVSEEEMIEACKKANI 1237
Query: 536 HNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAV 357
H FI+ LP GY T QKQR+ IARALIR+P++LLLDEATSALD++SE+ V
Sbjct: 1238 HEFILGLPNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVV 1297
Query: 356 TEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQ 177
EAL+ A++GRT + IAHRL++I+DAD I V D G I E G HAEL+ +G Y++L +Q
Sbjct: 1298 QEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAEAGTHAELVKQRGRYYELVVEQ 1357
Query: 176 NV 171
+
Sbjct: 1358 GL 1359
Score = 150 bits (363), Expect = 2e-37
Identities = 85/190 (44%), Positives = 124/190 (65%), Gaps = 7/190 (3%)
Frame = -3
Query: 716 LDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYG-DNSRKPTMDEXXXXXXXXX 540
LDG D+ ++L + LR Q+ +VQQEP+LF T+ ENI YG ++ K T+ +
Sbjct: 481 LDGKDL-RTLNVASLRNQISLVQQEPVLFATTVFENITYGLPDTIKGTLSKEELERRVYD 539
Query: 539 I------HNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALD 378
++FI++LP+ + TN QKQR+ IARA+I P++LLLDEATSALD
Sbjct: 540 AAKLANAYDFIMTLPEQFSTNVGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALD 599
Query: 377 ANSERAVTEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHY 198
+ SE V +ALD+A++ RT I IAHRL+TI++AD I V++ GKIVE+G+H EL+ L G Y
Sbjct: 600 SKSEVLVQKALDNASRSRTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAY 659
Query: 197 WQLSKQQNVT 168
+L + Q ++
Sbjct: 660 ARLVEAQKLS 669
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 136 bits (328), Expect = 4e-33
Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Frame = -3
Query: 689 LTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPK 510
+TLN LRK +GVV Q+ LF+ T+ NI YG+ K + DE IH+ I S P+
Sbjct: 510 ITLNSLRKAIGVVPQDTPLFNDTILYNIGYGNP--KASNDEIVEAAKKAKIHDIIESFPE 567
Query: 509 GYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAK 330
GY+T +KQR+ ++R L+++P +L DEATSALD N+ERA+ ++ K
Sbjct: 568 GYQTKVGERGLMISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLRNINDLIK 627
Query: 329 G--RTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQ 177
G +T + IAHRL TIKD DII VL+KG++VE+G+H +L+ Y + Q
Sbjct: 628 GSHKTSVFIAHRLRTIKDCDIIFVLEKGRVVEQGSHEQLMAKNSVYTSMWHSQ 680
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 134 bits (325), Expect = 1e-32
Identities = 74/171 (43%), Positives = 102/171 (59%)
Frame = -3
Query: 716 LDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXI 537
+D DI +++TL+ LR +GVV Q+ LF+ T+ NI Y S T +E I
Sbjct: 643 IDDQDI-RNVTLSSLRSSIGVVPQDSTLFNDTILYNIKYAKPSA--TNEEIYAAAKAAQI 699
Query: 536 HNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAV 357
H+ I+ P GY + +KQRV +ARA+++ P ++LLDEATSALD N+ER +
Sbjct: 700 HDRILQFPDGYNSRVGERGLKLSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQI 759
Query: 356 TEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKG 204
AL+ A GRT I IAHRL+TI +AD+I + G+IVE G H ELI G
Sbjct: 760 QAALNRLASGRTAIVIAHRLSTITNADLILCISNGRIVETGTHEELIKRDG 810
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 117 bits (281), Expect = 2e-27
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 2/191 (1%)
Frame = -3
Query: 743 YVVSLYKQELDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEX 564
Y S K DGVDI+ + +++ R G+V QEP+LF T+ ENIAYG ++ E
Sbjct: 534 YAPSSGKILADGVDIS-TYNVHQWRSHFGLVGQEPVLFSGTIGENIAYGKSNAS---QEE 589
Query: 563 XXXXXXXXIHNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSA 384
+F++S P+ + T QKQR+ IARAL+R+P L+LDEATSA
Sbjct: 590 IEDAAKRANCSFVLSFPEKWSTQVGTRGLQLSGGQKQRIAIARALLRNPAFLILDEATSA 649
Query: 383 LDANSERAVTEALDHAAKGR--TCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGL 210
LD +E V + + R T ITIAH+L TI+ AD I V+ GK++E+G+ L
Sbjct: 650 LDGEAEVMVDKTIQSLMHNRSMTTITIAHKLATIRRADQIIVVGDGKVLEQGSFERLSRP 709
Query: 209 KGHYWQLSKQQ 177
++++L + Q
Sbjct: 710 GTNFYKLMRWQ 720
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 97.5 bits (232), Expect = 2e-21
Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 1/184 (0%)
Frame = -3
Query: 719 ELDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXX 540
+LD ++IT S+ L+ LR +L ++ QE F+ T+ EN+ D + T +E
Sbjct: 1283 QLDDINIT-SIGLHDLRSRLAIIPQENQAFEGTIRENL---DPNANATDEEIWHALEAAS 1338
Query: 539 IHNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERA 360
+ FI +L G + Q+Q +C+ RAL+ R+LLLDEAT+A+D ++
Sbjct: 1339 LKQFIQTLDGGLYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAI 1398
Query: 359 VTEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGH-YWQLSK 183
V + RT +TIAHR+ T+ D++ I VLD GK+VE + +L+ K ++ L+K
Sbjct: 1399 VQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFYSLAK 1458
Query: 182 QQNV 171
+ +
Sbjct: 1459 ESGL 1462
Score = 49.6 bits (113), Expect = 5e-07
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Frame = -3
Query: 647 QEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXXXXXXX 468
Q+P + + T+ ENI +G P E +F + L G +T
Sbjct: 651 QQPWILNATIQENILFG-LELDPEFYEKTIRACCLL-RDFEI-LADGDQTEVGEKGISLS 707
Query: 467 XXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEAL---DHAAKGRTCITIAHRL 297
QK R+ +ARA+ + LLD+ SA+D + R + L + R I + L
Sbjct: 708 GGQKARISLARAVYSRSDIYLLDDILSAVDQHVNRDLVRNLLGSKGLLRSRCVILSTNSL 767
Query: 296 TTIKDADIICVLDKGKIVEKGNHAEL 219
T +K+A +I +L GKI+E G+ +L
Sbjct: 768 TVLKEASMIYMLRNGKIIESGSFTQL 793
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 97.1 bits (231), Expect = 2e-21
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
Frame = -3
Query: 725 KQELDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXX 546
K E+D DITK L LR +L ++ QE +F+ + EN+ D + + T +
Sbjct: 1283 KIEIDNEDITK-FGLYDLRSRLSIIPQESQIFEGNIRENL---DPNHRLTDKKIWEVLEI 1338
Query: 545 XXIHNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSE 366
+ N I L G + Q+Q +C+AR L+ S R+LLLDEAT+++ A ++
Sbjct: 1339 ASLKNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASVHAETD 1398
Query: 365 RAVTEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLK-GHYWQL 189
V + + K RT +T+AHR+ T+ D+D I VLD GK+VE +L+ K ++ L
Sbjct: 1399 AIVQQTIRKRFKDRTILTVAHRINTVMDSDRILVLDHGKVVEFDATKKLLENKDSMFYSL 1458
Query: 188 SKQQNV 171
+K+ +
Sbjct: 1459 AKESGL 1464
Score = 60.5 bits (140), Expect = 2e-10
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Frame = -3
Query: 662 LGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYETNXXXX 483
L Q+P +FD T+ ENI +G P + E +F + +G +T
Sbjct: 644 LAYAAQQPWIFDATIRENILFGSEF-DPELYEKTIHACCLK-RDFEI-FTEGDQTEVGQK 700
Query: 482 XXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKG--RT-CIT 312
QK R+ +ARA+ + LLD+ S++D + R + + L +G RT C+
Sbjct: 701 GASLSGGQKSRISLARAIYSQADIYLLDDVLSSVDQHVSRDLIKNL-FGPEGFLRTHCVV 759
Query: 311 IA-HRLTTIKDADIICVLDKGKIVEKGNHAEL 219
+ + L +K+AD I +L GKIVEKGN+ L
Sbjct: 760 LTTNSLNVLKEADSIYILSNGKIVEKGNYEHL 791
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 95.9 bits (228), Expect = 5e-21
Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Frame = -3
Query: 719 ELDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENI----AYGDNSRKPTMDEXXXXX 552
E+DG+DI SL L LR+++ ++ Q+P+L T+ N+ YGD +
Sbjct: 1239 EVDGIDIN-SLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCES 1297
Query: 551 XXXXIH-NFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDA 375
+ N + + +T Q+Q + +ARAL+R R+++LDE+T+++D
Sbjct: 1298 LVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDESTASVDD 1357
Query: 374 NSERAVTEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYW 195
++R + + L A K T + IAHR+ TI D D + VLD GK VE G+ L + +W
Sbjct: 1358 TTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSLYTQRRAFW 1417
Query: 194 QLSKQQNVT 168
++ K+ +++
Sbjct: 1418 KMCKESHIS 1426
Score = 36.3 bits (80), Expect = 0.005
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Frame = -3
Query: 701 ITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYGDNSRKPTMDEXXXXXXXXXIHNFIV 522
I+ +T + +++ V Q L + T+ NI +G+ + + N
Sbjct: 634 ISGKMTTPSISQRIAYVPQAAWLRNGTIRSNILFGEPYDEERYFQIIKACCLDSDLN--- 690
Query: 521 SLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEA-- 348
S+ G T QKQRV +ARAL + + + D+ SALD ++ R + E+
Sbjct: 691 SMNDGDLTYIHSNGSSLSGGQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCF 750
Query: 347 LDHAAKGRTCITIAHRLT 294
L + +T I H ++
Sbjct: 751 LSTLLQHKTIILFTHNVS 768
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 93.5 bits (222), Expect = 3e-20
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 1/177 (0%)
Frame = -3
Query: 716 LDGVDITKSLTLNRLRKQLGVVQQEPILFDRTLAENIAYG-DNSRKPTMDEXXXXXXXXX 540
+DG +T ++ N L K++ +V Q+P L T+ E++ YG D MD
Sbjct: 1159 IDGYPLT-NIDTNWLLKKVAIVDQKPHLLGSTILESLLYGVDRDINSVMDALDKTYMTEV 1217
Query: 539 IHNFIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERA 360
I N LP G +T Q QR+ ARAL+R+PRLL+LDE TSALD+ S
Sbjct: 1218 IQN----LPNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLL 1273
Query: 359 VTEALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQL 189
+ + + + + T + I H+ + +K AD I V+D G + E G+ EL+ H+W+L
Sbjct: 1274 LEKTIQNLS--CTVLIITHQPSLMKLADRIIVMDSGIVKESGSFDELMNRHTHFWKL 1328
Score = 81.0 bits (191), Expect = 2e-16
Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Frame = -3
Query: 674 LRKQLGVVQQEPILFDRTLAENIAY-GDNSRKPTMDEXXXXXXXXXIHNFIVSLPKGYET 498
L + +V Q+P++FD T+ ENI +N+ + +E F ++ + Y+T
Sbjct: 508 LGSTITLVCQQPVIFDMTIRENIIMRNENASESDFEEVCRLALVD---EFALTFDQSYDT 564
Query: 497 NXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTC 318
Q+QR+ +ARAL+R +L+LDE TSALD ++ V +A+ KG+T
Sbjct: 565 --PCKEASLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTT 622
Query: 317 ITIAHRLTTIKDADIICVLDKGKIVEKGNHAELI 216
+ I H ++ I + +++ V+DKG ++++ EL+
Sbjct: 623 LVITHDMSQINNDELVLVIDKGHLIQRCARKELV 656
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 83.4 bits (197), Expect = 3e-17
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 4/181 (2%)
Frame = -3
Query: 698 TKSLTLNRLRKQLGVVQQEPILFDRTLAENI----AYGDNSRKPTMDEXXXXXXXXXIHN 531
T+S+ LN LR+++ + Q+PILF T+ N+ DN + +
Sbjct: 1277 TQSVNLNALRQRISFIPQDPILFSGTVRSNLDPFDELEDNFLNEALKTSGASSMIMAHTD 1336
Query: 530 FIVSLPKGYETNXXXXXXXXXXXQKQRVCIARALIRSPRLLLLDEATSALDANSERAVTE 351
+ +T+ QKQ + +ARA++R ++++LDE T+++D ++ + +
Sbjct: 1337 DQKPIHITLDTHVASEGSNFSQGQKQVLALARAIVRRSKIIILDECTASVDDAMDQKIQK 1396
Query: 350 ALDHAAKGRTCITIAHRLTTIKDADIICVLDKGKIVEKGNHAELIGLKGHYWQLSKQQNV 171
L A T + IAHRL TI D D + VLDKG +VE G A L GH+ ++ +
Sbjct: 1397 TLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHNNGHFRRMCDGSGI 1456
Query: 170 T 168
T
Sbjct: 1457 T 1457
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAA--KGRTCITIAHRLTTIK 285
KQR+ +ARA+ ++L+D+ SALD ++ + + ++ + RT I + H +
Sbjct: 745 KQRIALARAVYSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLMENRTVILVTHNVHLFM 804
Query: 284 DADIICVLDK 255
D+ V K
Sbjct: 805 DSAAFIVTVK 814
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAHRLTTIKDA 279
++RV A + P +LLLDE T+ALD ++ A+ +AL++ G IT RL + A
Sbjct: 718 RRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLID-QVA 776
Query: 278 DIICVLDKGKIVE 240
+ I ++ G + E
Sbjct: 777 EEIWIVQNGTVKE 789
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEALDHAAKGRTCITIAH 303
K ++ +ARA+++ +LLLDE T+ LD + A EA + K TC+ ++H
Sbjct: 568 KMKLELARAMLQKADILLLDEPTNHLDV-ANIAWLEAYLTSQKNITCLIVSH 618
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANS 369
K +V IA L +P+LL+LDE T+ LD ++
Sbjct: 916 KVKVVIAACLWNNPQLLVLDEPTNFLDRDA 945
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 32.3 bits (70), Expect = 0.076
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALD 378
+ RV ++RAL P LLLLDE T+ LD
Sbjct: 226 RMRVALSRALFIKPSLLLLDEPTNHLD 252
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 32.3 bits (70), Expect = 0.076
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -3
Query: 458 KQRVCIARALIRSPRLLLLDEATSALDANSERAVTEAL 345
+ R+ +ARAL P LLLLDE ++ LD S ++E L
Sbjct: 360 RMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYL 397
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 31.1 bits (67), Expect = 0.17
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 455 QRVCIARALIRSPRLLLLDEATSALDANSERAVTEAL 345
+R +A L++ P+LLLLDE + LD S ++ L
Sbjct: 155 RRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLL 191
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 449 VCIARALIRSPRLLLLDEATSALD 378
+ RA+++ PRL++LDE +D
Sbjct: 414 ILFCRAIVKQPRLVVLDEPFQGVD 437
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 401 DEATSALDANSERAVTEALDHAAKGRTCITIAHRLTTIKDADIICVLDK 255
D ++S+ D NS T + + +A+ T T + T++KD D + DK
Sbjct: 309 DSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDK 357
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 159 ISSRDVLLFT*LPVMSLEANELCVVAFFYYFTFIQ 263
+SS + + +P++S NEL ++A F Y F++
Sbjct: 539 LSSMFIAFYKLMPIISKHLNELPIIASFDYTFFVR 573
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 619 SQRTSRTVTTVANLLWMKSL-QQLKRPIYTISSYL 518
S+ TS T+ T +L + L QQL + +YT+ SYL
Sbjct: 291 SEMTSSTILTPPSLTDTRQLMQQLDQLLYTLFSYL 325
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 222 LCVVAFFYYFTFI----QNTNDISVLDCS*TMSYSNASSAFGCMIQCLCYSPFTVGIQSR 389
+ VV F +F +I +N ND+S + ++ S S+ F CLC+ F + + +
Sbjct: 406 MIVVLLFGFFAYINEADKNGNDVSDTVFNWLLALSGLSNFFTWGSICLCHIIFRLAFKKQ 465
Query: 390 SCLIQE 407
++E
Sbjct: 466 GHSLKE 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,189
Number of Sequences: 5004
Number of extensions: 59167
Number of successful extensions: 184
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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