Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e14
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   1.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   4.0  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   4.0  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   7.0  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   7.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.2  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 294 FPYIP*NLTTTYIPLLPLNPSIQPTTIHST 383
           FPY+  N+  +  P  PLN S Q  TIHS+
Sbjct: 395 FPYVEPNVDRSKFPKSPLNSS-QEVTIHSS 423


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 608 LYFNNLKRLLNLFTLITLNAFSTSLITLNAF 700
           L F+N K+LLNL   + +  F  SL  +  F
Sbjct: 635 LLFSNFKQLLNLMLFLVIVLFIASLCAVRLF 665


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 714 IKEVEKAFKVIKEVEKAFKVIK 649
           +KE+E+  K IK +EK  K IK
Sbjct: 34  LKEIEQRLKSIKNIEKITKTIK 55


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 YTNSNTPPQHLHTFFSVYNLIPKKNNAN 271
           YT ++  PQ   T+ SVY  +P+K  AN
Sbjct: 153 YTMNDLFPQSFPTWISVYRNVPEKAWAN 180


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 80  LTFSYENTMICFLKHLK*FQYSKSNQVSSVAC 175
           L+FS  N  + F  +   F+Y K ++ S + C
Sbjct: 595 LSFSKLNDFVVFFNNYSRFEYEKESKRSDIVC 626


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 239 RRRKMCASVEGVCWSLY 189
           R  ++C+S++ +CW LY
Sbjct: 231 RLYRLCSSLKRICWELY 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,579
Number of Sequences: 5004
Number of extensions: 51246
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)