Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e14
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    30   2.1  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    29   3.7  
U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbona...    29   3.7  
U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbona...    29   3.7  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    29   3.7  
AL117195-8|CAB55030.1|  258|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    28   8.6  

>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 765 KAFKVIKVKRLRXAFKVIKEVEKAFKVIKEVEKAFK 658
           K F   ++KR R  F+V  + E+ F ++ E+EKA +
Sbjct: 269 KWFLPDQIKRARPTFRVFDDGEQVFVIVHELEKAME 304


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
            transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 337  YFHLIPQFNQQLFIQPFKLNTIFNVA-SFNPFLLLQLQFDQKCTFIQPFNHSTLTSLLTH 513
            Y   +PQ    LF     L  I   A  F+P+  +++ F   C F  P  H+ +  L+ +
Sbjct: 890  YIRKVPQRKVHLFTACQLLQLIILCAFGFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDY 949


>U23175-2|AAM98009.1|  797|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform b protein.
          Length = 797

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 337 YFHLIPQFNQQLFIQPFKLNTIFNVA-SFNPFLLLQLQFDQKCTFIQPFNHSTLTSLLTH 513
           Y   +PQ    LF     L  I   A  F+P+  +++ F   C F  P  H+ +  L+ +
Sbjct: 728 YIRKVPQRKVHLFTACQLLQLIILCAFGFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDY 787


>U23175-1|AAZ91355.1|  826|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform c protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 337 YFHLIPQFNQQLFIQPFKLNTIFNVA-SFNPFLLLQLQFDQKCTFIQPFNHSTLTSLLTH 513
           Y   +PQ    LF     L  I   A  F+P+  +++ F   C F  P  H+ +  L+ +
Sbjct: 757 YIRKVPQRKVHLFTACQLLQLIILCAFGFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDY 816


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transporter
            ABTS-3 protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 337  YFHLIPQFNQQLFIQPFKLNTIFNVA-SFNPFLLLQLQFDQKCTFIQPFNHSTLTSLLTH 513
            Y   +PQ    LF     L  I   A  F+P+  +++ F   C F  P  H+ +  L+ +
Sbjct: 890  YIRKVPQRKVHLFTACQLLQLIILCAFGFSPYPFIEMVFPIVCFFFLPIRHTLIPRLIDY 949


>AL117195-8|CAB55030.1|  258|Caenorhabditis elegans Hypothetical
           protein Y57A10A.10 protein.
          Length = 258

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 759 FKVIKVKRLRXAFKVIKEVEKAFKVIKEVEKAFKV 655
           +K+ K+  ++    V+KEV++A+KV   V  A K+
Sbjct: 76  YKIAKITPVKCVLAVMKEVKRAYKVSHGVSHAAKL 110


>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 14  FYLYIFYKTITWFFMPCLD 70
           FY+Y+F+KTIT    P  D
Sbjct: 315 FYIYLFFKTITKMLQPSQD 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,008
Number of Sequences: 27780
Number of extensions: 273229
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)