Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15e11
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 36 0.007
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 31 0.20
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 30 0.47
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 29 0.81
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 29 1.1
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 29 1.1
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 28 1.4
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 28 1.9
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.9
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 2.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 3.3
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 27 3.3
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 4.3
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 5.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 7.6
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 7.6
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 26 7.6
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 26 7.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 7.6
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 7.6
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 35.9 bits (79), Expect = 0.007
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = -2
Query: 769 ENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKD 611
ENSI QDE+ +Q +IEK+ E I V E E L TLE E E P ++V+D
Sbjct: 908 ENSILQDEVEETRQDDIEKDELEDIKEVKEDENLTTLE-ETIEIPANDIEVQD 959
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 31.1 bits (67), Expect = 0.20
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 739 MKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPI 632
+ QQ + E +E + +G E L LEK Y EDP+
Sbjct: 90 LDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPL 125
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.9 bits (64), Expect = 0.47
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = -2
Query: 823 LKMADDASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYN 644
L+ A + GITG + E Q + + QQ ++KE+ + + + E E++ N
Sbjct: 195 LENAKVINEQEGITGQSFERGDAQLQPVKLQQMPMDKEMEKIVEMDLEEEDMMHQNDPNN 254
Query: 643 EDPIYLLKVKDL 608
+ P L + + L
Sbjct: 255 QSPKLLKEFRKL 266
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 29.1 bits (62), Expect = 0.81
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -2
Query: 811 DDASSSSGITGNTVENSINQDEL---IMKQQREIEKEISETIPLVGEIE-ELQTLEKEYN 644
+D SG+ G+ + +S D+L I++ Q EK+ G +E L +L +
Sbjct: 85 EDLGGPSGLDGSQLSSSFQNDQLLNVILEDQFATEKDSDNGAVNYGALEAALNSLMSQVT 144
Query: 643 EDPIYLLKVKDLSSKY 596
I +KDL + Y
Sbjct: 145 SKEILYEPLKDLEANY 160
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 290 GVPSSYYIWPAADRPRILSEFY*RTTHCY*VL*TGSGTDV 171
G+ SS Y+W AA + + T H VL TG GT +
Sbjct: 142 GLASSIYLWSAASGKVVQLHDFGATNHVTSVLWTGKGTQL 181
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = -2
Query: 550 AFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAG 371
AF+++ +E K E D EIAKNS + A G D + + I+ VG+ +
Sbjct: 84 AFTFS-IENFKRSKYEVDMLMEIAKNSLTQITAHG-------DLVDQYGIRIRIVGDLSR 135
Query: 370 STPDLIET 347
PD++ET
Sbjct: 136 LQPDVLET 143
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = -2
Query: 532 LERLLTDKQEYDKFYEIAKNSKDILVA-LGFSQFTVEDFYETFM---EVIQRV 386
LERLL+D Q +KF + KN + LV +G + + F T + EVI+R+
Sbjct: 32 LERLLSDAQPTEKFNSLIKNMAERLVLFVGQIEELKDAFCNTTIVSEEVIERI 84
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -2
Query: 442 SQFTVEDFYETFMEVIQRV-GEHAGSTPDLIETVRMELHDKFNKQGYSDYIVVYLRLITS 266
S+ +E Y+ V + G P L E + H N + SD+ + +L+ S
Sbjct: 132 SEVELERTYQDQQSVPDAISGFQPDMDPRLREVLEQLEHSDINDEETSDFDEEFEKLVAS 191
Query: 265 GQLQTDQEFYQNFIE 221
G+ + + Q F+E
Sbjct: 192 GKADESEFYAQPFVE 206
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 757 NQDELIMKQQREIEKEI---SETIPLVGEIEELQTLEKE 650
NQ+ LI++++ E+EK I SE + +E Q++E+E
Sbjct: 141 NQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQE 179
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 745 LIMKQQREIEKEISETIPLVGEIEELQTLEKEYN 644
++ +QQREI+ + + IEELQTL N
Sbjct: 53 VVQRQQREIDNQKRDLCTKTKHIEELQTLLSNAN 86
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -2
Query: 676 EELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTD 512
+E+ TL+ +Y+E ++ K +S S R + +FS+A +++L D
Sbjct: 682 DEMYTLDNDYSEPDAFMTAKKKISKLNDSSRAILGWASLLGPSFSFATVKKLCKD 736
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 140 CYDMDMVRLFVHRFHFLSTKLSNSAWSFNKILIKFLVCLQLAR 268
CYD+ + L R+ ++T L + FN LIK V +++++
Sbjct: 2013 CYDLKIHELGKERYDIIATPLFQNLTEFND-LIKSKVAIRVSK 2054
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 733 QQREIEKEISETIPLVGEIE-ELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPD 569
Q + EK+ E + E +LQT+ +EY + +++++++L + R+T D
Sbjct: 218 QAKTWEKKFREALRDSKEYAAQLQTIHEEYEQQQAHIVRMEELIHAVEKERKTETD 273
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/48 (20%), Positives = 30/48 (62%)
Frame = -2
Query: 775 TVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPI 632
+ +NS ++ K++++ + + +T+ +I+E++ +KE +E+P+
Sbjct: 263 SAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPV 310
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 526 RLLTDKQEYDKFYEIAKNSKDILVALGFSQFTV-EDFYET 410
RL EYD+FY I S + + SQF + ED ET
Sbjct: 172 RLDPKSSEYDEFYIINYASVTKSITISHSQFAINEDINET 211
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 832 SCYLKMADDASSSSGITGNTVENSINQD 749
SC +K++DD +S+ +T NSI +
Sbjct: 135 SCLIKLSDDEASNKSSRSSTPRNSIKSN 162
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = -2
Query: 712 EISETIPLVGEIEELQTLEKEYNEDPIYL-------LKVKDLSSKYK 593
+I E L+GEIEE + K +N + I + LK +D+S+ ++
Sbjct: 888 QIREISQLIGEIEEFTKIAKAFNVEAILVDHKVLISLKSRDISNHFQ 934
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = -2
Query: 775 TVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDPIYLLKVKDLSSKY 596
TVEN++N DE+ E +E+ ++I + ++ +L+ K + IY L V +
Sbjct: 583 TVENNVNVDEI------ENYEEVRDSI--LKKLSDLRDRPKRSEKPRIYHLDVASMYPNI 634
Query: 595 KSIRRTRPD 569
R +PD
Sbjct: 635 MITNRLQPD 643
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 703 ETIPLVGEIEELQTLEKEYN 644
+T+P +G++ LQ + KEYN
Sbjct: 206 DTLPEIGKLFHLQEVHKEYN 225
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -2
Query: 748 ELIMKQQREIEKEISETIPLVGEIEELQT 662
E I+K +E+E E+ TIP++ + +E++T
Sbjct: 28 EGIVKAYKELEAELPVTIPVIIDGKEVET 56
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 404 HKSFVKIFNGELRKP*GDENIFRIFC 481
+K V +F E+ P GDE I ++FC
Sbjct: 269 NKDKVALFKSEIFGPNGDEYITQLFC 294
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 495 LSYSCLSVSKRSKYAYENARKKQLPSGR 578
L Y C VSKR K AY+ ++K+L + +
Sbjct: 1031 LLYDCCQVSKREK-AYKQLKQKKLNNAK 1057
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 658 EKEYNEDPIYLLKVKDLSSKYKSIR 584
E+ YN YL + D KYKS+R
Sbjct: 293 EESYNPPEEYLKQSSDFPKKYKSLR 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,617,520
Number of Sequences: 5004
Number of extensions: 79325
Number of successful extensions: 261
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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