Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15e11
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 130 1e-30
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 63 3e-10
02_03_0401 - 18604244-18604303,18605059-18605346,18605459-186055... 53 2e-07
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 46 5e-05
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798... 39 0.004
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173... 38 0.010
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 36 0.030
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14... 31 1.5
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 30 2.0
11_06_0738 - 26807046-26807129,26807720-26807957,26809374-268115... 30 2.6
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886... 30 2.6
11_03_0060 - 9406273-9407142 29 4.6
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 29 6.0
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 130 bits (315), Expect = 1e-30
Identities = 92/270 (34%), Positives = 141/270 (52%), Gaps = 30/270 (11%)
Frame = -2
Query: 721 IEKEISETIPLVGEIEELQTLEKEYNE-DPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAF 545
+ K IS + +E L TL E+ PI K+K L +Y ++RRTR DGNCF+R+F
Sbjct: 103 LNKFISVVSIFILWMEPLSTLAAEFQSGSPILQEKIKLLGEQYDALRRTRGDGNCFYRSF 162
Query: 544 SYAYLERLL--TDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAG 371
++YLE +L DK E ++ + + K L LG+ +FT EDF+ F++ ++ V +
Sbjct: 163 MFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFEDFFSIFIDQLESVLQGHE 222
Query: 370 STPDLIETVRMELHDKFNK---QGYSDYIVVYLRLIT----------SGQLQTDQEFYQN 230
S+ + + ++ +F + G ++ VV + I G ++ + Y+
Sbjct: 223 SSIGFVTSGEIQRRAEFFEPFISGLTNSTVVQVSSILPFYEGLYSRWGGIMRYNTSRYRE 282
Query: 229 FIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGE----GSQVIAHD 62
+ FC+ VEPM +ESDH+HIIALS+AL V +RV Y+DR V HD
Sbjct: 283 -LPHISIKCVFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSSCDAGNISVNHHD 341
Query: 61 F-PEGST---------PLVHLLYRPGHYDI 2
F PE ++ P + LLYRPGHYDI
Sbjct: 342 FSPEANSSDGAAAAEKPYITLLYRPGHYDI 371
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 62.9 bits (146), Expect = 3e-10
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 7/183 (3%)
Frame = -2
Query: 622 KVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDI----LV 455
K+ LS KY R DG+CF+RAF ++Y+ER++ + + ++ E+++ + I
Sbjct: 255 KITLLSEKYDFFRPVDRDGSCFYRAFIFSYMERIVAMQDDLERIIEVSRIGERIGKYKQA 314
Query: 454 ALGFSQFTVEDFYETFMEVIQRVGEHAGSTPDLIET-VRMELHDKFNKQGYSDYIVVYLR 278
F F + E F++ + + +LIE V +E + ++ + + +LR
Sbjct: 315 YARFGSFGIPQ--EEFLKALSAFEQ----LINLIEKGVAVEQLYQIDETDITKNSLRFLR 368
Query: 277 LITSGQLQTDQEFYQNFI--EGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVK 104
+T ++ T ++ Y+ F+ +V EFC+ EV P E+ + + AL AL + V V+
Sbjct: 369 FLTEIEICTHEDHYKGFLLTADYSSVFEFCQVEVRPENAEASNEQMKALVEALGIPVLVE 428
Query: 103 YMD 95
+D
Sbjct: 429 NLD 431
Score = 31.5 bits (68), Expect = 0.86
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 91 GEGSQVIAHDFPEGSTPLVHLLYRPGHYDI 2
G+G + I P L LLYRPGHYDI
Sbjct: 515 GKGDRTINDLSPAERRRLAILLYRPGHYDI 544
>02_03_0401 -
18604244-18604303,18605059-18605346,18605459-18605562,
18605640-18605686,18605790-18605860,18606482-18606601,
18606686-18606856,18607304-18607393,18608949-18609041,
18609141-18609461
Length = 454
Score = 53.2 bits (122), Expect = 2e-07
Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 9/223 (4%)
Frame = -2
Query: 643 EDPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTD--KQEYDKFY----EI 482
+ P L++K LS Y R D CF+R+F ++YLE+++ +E D+ +
Sbjct: 188 QQPEVGLRLKYLSHHYSEFRPVHRDEECFYRSFIFSYLEQVVDSIGTREEDRLLAAVRAL 247
Query: 481 AKNSKDILVALGFSQFTVEDFYETFMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYS 302
A ++++ A FSQ ++ F +I+++ I +R ++ + F+ +
Sbjct: 248 ATKAENLQWASEFSQ-----KHKAFERLIEKIKGWKRMQEHPISIIRGKILEFFSSYDTT 302
Query: 301 DYIVVYLRLITSGQLQT---DQEFYQNFIEGPRTVTEFCRQEVEPMYKESDHIHIIALSN 131
D I +LRL+ + + T + E+ + + ++C + V + + A +
Sbjct: 303 DDIFAFLRLVAATWMCTRIWNYEWCATNCGENQNLEDWCSKHVIAPRVYATSAAVKACAE 362
Query: 130 ALKVCVRVKYMDRGEGSQVIAHDFPEGSTPLVHLLYRPGHYDI 2
AL+V V+V+ + +G+ H G+ P V LL HYDI
Sbjct: 363 ALRVTVQVENVH--DGTCESTHYIVRGA-PCVTLLRIESHYDI 402
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 45.6 bits (103), Expect = 5e-05
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = -2
Query: 343 RMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQNFIEG---PRTVTEFCRQEVEPM 173
R +L + F+ SD I+ +L+ + + + +E Y+ I G T+ +C +
Sbjct: 333 RQKLLEFFSSYSKSDGILAFLKYAAANWICSHREEYEPNIAGLGGGYTLEAWCEIYLLQP 392
Query: 172 YKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPEGSTPLVHLLYRPGHYDI 2
+++DHI + A++ AL V +RV+ + G + D + P V LLY HYDI
Sbjct: 393 REQTDHIQMTAVAAALGVPLRVENLHNGPAQDIYTADGV--NIPRVTLLYTGVHYDI 447
>02_04_0035 +
19078267-19078479,19078588-19078674,19079792-19079863,
19080338-19080526,19080599-19080718,19081348-19081430,
19081518-19081773,19081878-19082199,19086355-19086548,
19087135-19087227,19089327-19089497,19089580-19089699,
19090303-19090373,19090608-19090675,19091097-19091191
Length = 717
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -2
Query: 685 GEIEELQTLEKEYNEDPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLL--TD 512
G+I + L K E I ++++ L S Y ++R DG F+R+F ++YLE+++ D
Sbjct: 137 GDIHNVLRLSKRERESVI-IMRLVPLHSHYSALRPVYRDGESFYRSFIFSYLEQIVDRVD 195
Query: 511 KQEYDK 494
E D+
Sbjct: 196 MGEEDR 201
Score = 32.7 bits (71), Expect = 0.37
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = -2
Query: 214 RTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRG--EGSQVIAHDFPEGSTP 41
R++ ++C +V P +D + + AL+ AL+V +RV+ + G + S IA D P
Sbjct: 336 RSLEDWCSTQVIPPRVYADEVAVRALAAALQVFIRVEAPEYGGRQDSYYIARD-----RP 390
Query: 40 LVHLLYRPGHYDI 2
V LL YDI
Sbjct: 391 RVTLLRMDSQYDI 403
Score = 32.7 bits (71), Expect = 0.37
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 610 LSSKYKSIRRTRPDGNCFFRAFSYAYLERLL 518
L Y R PD CF+R+F ++YLE+++
Sbjct: 574 LDHDYSEFRPVVPDEECFYRSFIFSYLEQVV 604
>02_04_0001 -
18816492-18816741,18816881-18817050,18817244-18817388,
18817495-18817565,18817910-18817993,18818103-18818222,
18818310-18818480,18818955-18819044,18821893-18821985,
18822073-18822405
Length = 508
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = -2
Query: 625 LKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLL--TDKQEYDKFYE----IAKNSKD 464
L + L ++Y +R R DG F+R+F ++YLE++ D +E D+ + +A ++
Sbjct: 198 LHLAHLDTRYSELRPVRRDGEGFYRSFMFSYLEQVADRVDTREEDRLLDAVRKLATRAEH 257
Query: 463 ILVALGFSQFTVEDFYETFMEVIQRVGEH 377
+ A FS+ E+ + F V + +H
Sbjct: 258 LQWASEFSR-RCEEMHHCFTIVARHRSQH 285
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 202 EFCRQEVEPMYKESDHIHIIALSNALKVCVRVK 104
++C +V P +DH+ + ALS AL V VRV+
Sbjct: 369 QWCSTQVIPPRVHADHVTMSALSRALGVAVRVE 401
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 36.3 bits (80), Expect = 0.030
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Frame = -2
Query: 280 RLITSGQLQTDQEFYQNFIE--GPRTVTEF-CRQEVEPMYKESDHIHIIALSNALKVCVR 110
R + + + + ++ Y+ +++ G EF C + P +DH+ + AL+ A +V ++
Sbjct: 377 RSLAATWICSHKDEYEQYVDDLGDDYPLEFWCATNLLPPRLYTDHVPMRALAAAFRVPLQ 436
Query: 109 VKYMDRGEGSQVIAHDFPEGSTPLVHLLYRPGHYDI 2
V+ + G + D + P V LLY HYDI
Sbjct: 437 VENLHNGPAQDIYTADGVD--VPRVTLLYTGAHYDI 470
>03_01_0017 -
148934-148999,149000-149074,149343-149408,149737-149793,
150422-150537,150821-151103,151413-151468,151585-151682,
152233-152291,152747-152818,152892-153077,153303-153305
Length = 378
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 334 LHDKFNKQGYS-DYIVVYLRLITSGQLQTDQEFYQNFIEGPRTVTEFCRQ 188
L D K+GY DYI Y +++TS L + + ++F +TEFCR+
Sbjct: 85 LLDLMEKRGYGEDYINRY-KMMTSAPLTSVPVWARDFDSPEELITEFCRE 133
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 56 WKIMCYHLATFTPIHVLHSDAHL--ECITQCYDMDMVRLFVHRF 181
W +C H+++ P HV++S A L + C +D R F R+
Sbjct: 688 WSKLCLHVSSSPPYHVVYSTALLCFSFVAPCGALDAARPFAMRW 731
>11_06_0738 -
26807046-26807129,26807720-26807957,26809374-26811509,
26812145-26813253
Length = 1188
Score = 29.9 bits (64), Expect = 2.6
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Frame = -2
Query: 682 EIEELQTLEKEYNEDPIYLLKVKDL--SSKYKSIRRTRPDGNCFFRAFSYAYLERLLTDK 509
++ L + + + +D YL+ + L +S + I+ PDGN R + +E L
Sbjct: 354 KVHSLISSIRTHLQDKRYLIIIDGLWATSTWDVIKCALPDGNSSSRILTTTEIEDLALQS 413
Query: 508 QEYD-KFYEIAK-----NSKDILVALGFSQFT--VEDFYETFMEVIQRVGEHAGSTPDLI 353
YD KF K +S+ + ++ F + + ET +++++ G P I
Sbjct: 414 CSYDLKFIFKMKPFGEGDSRKLFFSIVFGSHSKCPPEVSETLYDIVRK----CGGLPLAI 469
Query: 352 ETVRMELHDKFNKQGYSDYI 293
TV L + KQ DYI
Sbjct: 470 VTVASLLASQLEKQEQLDYI 489
>09_06_0146 +
21186889-21187178,21187321-21187435,21188595-21188686,
21188839-21188952,21189139-21189193,21189348-21189458,
21190226-21190279,21190362-21190537,21190623-21190730,
21191332-21191405,21191500-21191675,21192169-21192264,
21192534-21192614,21192713-21192766,21193246-21193380,
21193453-21193533
Length = 603
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = -2
Query: 436 FTVEDFYETFMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQGYS 302
F+ D Y ++V VG H T DLIE+VR E+ QG+S
Sbjct: 240 FSTNDGYS--LDVFVVVGWHDEETEDLIESVRKEIGKIDETQGWS 282
>11_03_0060 - 9406273-9407142
Length = 289
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -2
Query: 739 MKQQREIEKEISETIPLVGEIEELQTLEKE---YNEDPIYLLKVKDL 608
+K R E ISE +GE++ELQTLE + E P ++++K+L
Sbjct: 52 LKYLRLSEVSISELPEQIGELQELQTLELQRTSIKELPKSIVRLKNL 98
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 28.7 bits (61), Expect = 6.0
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = -2
Query: 766 NSINQDELIMKQQREIEKEISETIPLVGEI-EELQTLEKEYNEDPIYLLKVKDLSSKYKS 590
N +D+ + K+ ++E+ + G + EE+Q L+ E N Y+ K SSK +S
Sbjct: 383 NKAARDKWLQKEIDDLERVLLSNRKQEGLLQEEIQKLKDEINNLNSYIESRKSESSKLES 442
Query: 589 -IRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVA 452
+ + D N + ER K+E D EI + D++ A
Sbjct: 443 ALAKKHNDYNDLRKQRDELQEERKSFWKEEADVTAEIDRLKDDLVKA 489
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,205,566
Number of Sequences: 37544
Number of extensions: 471049
Number of successful extensions: 1206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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