Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15e11
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81039-6|CAB02772.1| 284|Caenorhabditis elegans Hypothetical pr... 163 2e-40
U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical p... 32 0.58
Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical p... 32 0.58
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 32 0.58
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 31 0.77
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 31 0.77
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 29 3.1
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 29 3.1
Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical pr... 29 5.4
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 29 5.4
U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulat... 28 7.2
U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical pr... 28 7.2
U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protei... 28 9.5
>Z81039-6|CAB02772.1| 284|Caenorhabditis elegans Hypothetical
protein C25D7.8 protein.
Length = 284
Score = 163 bits (395), Expect = 2e-40
Identities = 98/281 (34%), Positives = 153/281 (54%), Gaps = 9/281 (3%)
Frame = -2
Query: 817 MADDASSSSGITGNTVENSINQDELIMKQQ--REIEKEISETIPLVGEIEELQTLEKEYN 644
MA++ S G E + DE++++ Q + IE E +++PLV + L EY+
Sbjct: 1 MANEPQKSDD-NGQAAEAVVTDDEIVLQDQQLKTIEDE-QKSVPLVATLAPFSILCAEYD 58
Query: 643 EDP--IYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNS 470
+ +L K +LS Y IR R DGNCF+RA +E +L D+ +KF +++
Sbjct: 59 NETSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDW 118
Query: 469 KDILVALGFSQFTVEDFYETFMEVIQRVGEHAG-STPDLIETVRMELHDKFNKQGYSDYI 293
LV LGF +T DF + F+E ++++ H+G T + + T+ N G ++YI
Sbjct: 119 TRTLVELGFPDWTCTDFCDFFIEFLEKI--HSGVHTEEAVYTI-------LNDDGSANYI 169
Query: 292 VVYLRLITSGQLQTDQEFYQNFIEGPRTVTEFCRQEVEPMYKESDHIHIIALSNALKVCV 113
+++ RLITS L+ + E Y FI+ TV ++C QE+EPM+K++DH+ I +L A V
Sbjct: 170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRV 229
Query: 112 RVKYMDRGEGSQVIAH-DFPEGS---TPLVHLLYRPGHYDI 2
R++YMDR H D P P + LLYRPGHYD+
Sbjct: 230 RIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRPGHYDV 270
>U64845-2|AAC48031.2| 980|Caenorhabditis elegans Hypothetical
protein F45F2.10 protein.
Length = 980
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = -2
Query: 814 ADDASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDP 635
A + SSS G T +N+ Q +L KQ++E+E++ E + G + +KE ++P
Sbjct: 155 AQPSCSSSKQNGKTAKNNFKQKQLTKKQRKELERKEFE---ISGAPAPIYPGQKERTKNP 211
Query: 634 IYLLKVKD 611
I + K+
Sbjct: 212 IEYVVEKE 219
>Z68161-11|CAA92300.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 790 GITGNTVENSI-NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKE 650
G G+ + +I NQ+EL+ KQ EIE+ E+ L+ + EE++ + E
Sbjct: 68 GECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSE 115
>Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 790 GITGNTVENSI-NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKE 650
G G+ + +I NQ+EL+ KQ EIE+ E+ L+ + EE++ + E
Sbjct: 68 GECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSE 115
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = -2
Query: 661 LEKEYNEDPIYLLKVKDLSSKYKSIRRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEI 482
+EK NE + + K D + K I DGNCF+RA S+ LT Q+Y K I
Sbjct: 695 VEKLENEKSVVMKKF-DRPGRVKGIES---DGNCFYRAISWC-----LTGSQKYHKALRI 745
Query: 481 A 479
A
Sbjct: 746 A 746
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 586 RRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETF 407
R PDGNCF+RA S+ +T Q + + A L F ++ + YE +
Sbjct: 599 RGITPDGNCFYRAISW-----WITGVQSHHMIFREAVGKHLKKNELMFKKYCHNEIYEKY 653
Query: 406 MEVIQRVG 383
+E R G
Sbjct: 654 VENAMRDG 661
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 586 RRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETF 407
R PDGNCF+RA S+ +T Q + + A L F ++ + YE +
Sbjct: 599 RGITPDGNCFYRAISW-----WITGVQSHHMIFREAVGKHLKKNELMFKKYCHNEIYEKY 653
Query: 406 MEVIQRVG 383
+E R G
Sbjct: 654 VENAMRDG 661
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 757 NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNED 638
N++ I + ++++ ++ISE L +IE L L + YNE+
Sbjct: 990 NKNNQIDELKKQLNQKISEVNKLSSKIEALSQLNRTYNEE 1029
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = -2
Query: 586 RRTRPDGNCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETF 407
R+ DGNCF+RA S+ LT + + + A F ++ ++ YE +
Sbjct: 326 RKIEADGNCFYRAVSW-----WLTGVESHHMIFREAVGKHLKKNEPKFKKYCHDEIYEKY 380
Query: 406 MEVIQRVGEHAGSTPDLIETVRM 338
++ + R G A ST ++ M
Sbjct: 381 VDNVMREGVWA-STCEIFAMANM 402
>Z81098-1|CAB03183.1| 581|Caenorhabditis elegans Hypothetical
protein K07A12.1 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 35 DKRSRTLWKIMCYHLATFTPIHVLHSDAHLECITQCYDMDMVRLFVHRFHFLST---KLS 205
D R +W + Y ATF P H H +L+ Y+ L +HR H L+ +
Sbjct: 192 DLIERGIWYVDQYAAATFEPFHWKHRMDYLD-----YENRAFYLLLHR-HMLNAAHKRCW 245
Query: 206 NSAWSFNKILIK 241
+AW+ K++ K
Sbjct: 246 ETAWNTAKMIFK 257
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = -2
Query: 511 KQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFM--EVIQRV----GEHAGSTPDLIE 350
K E +F+ ++ +L +G +V FY+ + + R +GS +
Sbjct: 120 KPEGSRFFTLSPKIYGLLSDIGVKTHSVMKFYDEHVGSRSVNRSDLEPANLSGSQWVTAD 179
Query: 349 TVRMELHDKFNKQGYSDYIVVYLRLITSGQLQTDQEFYQNFIEGPRTVT 203
++ +L +KF+K+ Y I+ + L + +Q+F F E P T +
Sbjct: 180 KLKKKLSEKFSKELYGQVIIAFEHLASLPGSAIEQKFLMEFRE-PMTAS 227
>U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulated
protein 191 protein.
Length = 97
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 407 KSFVKIFNGELRKP*GDENIF----RIFCYFVKLIIFLLISQ*AF 529
+S + N E KP G +NI+ FCYF +I+F+ S F
Sbjct: 27 QSICSVENVETEKPIGVKNIYIFCSFFFCYFCFVILFVFFSSPCF 71
>U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical
protein C06E7.2 protein.
Length = 501
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 772 VENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNE 641
+ N I DE+ +++ + EKE++E I + EE EK+ E
Sbjct: 400 ISNEIPVDEISKEEEEKAEKELNEIIKELKSDEEAVDGEKDVGE 443
>U00066-8|AAM54164.1| 777|Caenorhabditis elegans Mediator protein
15, isoform b protein.
Length = 777
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 67 VLSPGYLHPDPCTSLGRTP 123
VL P H PCT+ G TP
Sbjct: 79 VLQPSQFHSPPCTTAGNTP 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,649,815
Number of Sequences: 27780
Number of extensions: 434054
Number of successful extensions: 1293
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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