Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e06
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    29   0.99 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    28   1.7  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   1.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.0  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   4.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.0  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 498 PSIRQYNWFPSGLSKGSAAVQVEMPSLTNNVCHYEIVCNCGVKR--TKLNCNCRDDASAM 325
           PS+ + N FPSGLSK     +  +  LT +V     VC    +R   ++  N +D +  +
Sbjct: 432 PSVPEGNKFPSGLSKMFLKRKQRVMLLT-DVGRCAFVCKGKHERLFIEMEVNLKDSSVVV 490

Query: 324 SIDETVSK 301
             DE  SK
Sbjct: 491 IFDENSSK 498


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
 Frame = -1

Query: 672 WFVRSIGDPFHIQPYPNSPEGVIFNRYNIISDSQPVQPFDLKFHNDRWTSTTDLHYFYP- 496
           +F++S+G  F +  +P+S      +   +  D  P+  F +            + +F P 
Sbjct: 240 YFLKSLGSLFELALFPHSA-----HNQKVQDDVSPLNDFAILSP----LIHAQICFFLPK 290

Query: 495 SIRQYNWFPSGLSKGSAAVQVEMPSLTNNVCHYEIVCNCGVKRTKLNCNCRDDASAMSID 316
           S+ Q N   S L + S      M +L   +C+Y       +K  K+N N +  +  +S+D
Sbjct: 291 SVWQVNGLTS-LFRASFH-GYSMYALERKMCNYHNPSILLIKAKKINANHKSSSRPISLD 348

Query: 315 ETVSK 301
            T+ +
Sbjct: 349 ATIPR 353


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 357 NCNCRDDASAMSIDETVSKPAAKTHKNETNEPSSLTVIKRNVICECNKSDI 205
           +CNC        ID    KPA  ++++++N    +     N+I +C +S I
Sbjct: 539 SCNCFSHLQTKLIDSG-PKPANNSYQHQSNFIGVVISTNHNIIKKCQESQI 588


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -2

Query: 659 VLGIHFISNHILIRQKALFLIDTILYRIVNPSNHL 555
           ++GI F+S   +I + + F +++I++RI  P N++
Sbjct: 887 IIGIDFMS---VISRGSQFKVESIMFRIAKPENYI 918


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 323 LLMRQFRNLQQKLIRMKLMSPLH*PLLK 240
           L+ R F+N+ +  +R  L+ P H P+ K
Sbjct: 547 LITRPFKNVNKMSVRKALIKPFHPPISK 574


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 363 LFF*LHSYKQSRNDIHCWLNLAFP 434
           L+F LHS    RN +H WL   FP
Sbjct: 242 LYFNLHSICD-RNTVHMWLQWIFP 264


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 742 HPRYTLSNQRTLWVTLLECK*TPV 671
           H  YT+S +   W+ +L CK  PV
Sbjct: 672 HFHYTVSAEEHKWMDVLSCKSVPV 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,082
Number of Sequences: 5004
Number of extensions: 64975
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)