Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e06
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585...    31   0.78 
12_01_0031 - 264610-265986                                             28   7.2  
08_02_0556 + 18592393-18592580,18592839-18593031,18593110-185934...    28   7.2  
04_03_0222 + 12928470-12928779,12931919-12932052,12932352-129325...    28   7.2  
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831     28   9.6  
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    28   9.6  

>04_01_0451 +
           5845249-5846133,5846220-5846509,5855590-5856060,
           5856898-5857063,5857100-5857498,5858031-5858075
          Length = 751

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 729 HCPTNAPYGLPYWNANKPLWFVRSIGDPFHIQPYPNSPEGVIFNRYNIISDSQPVQPFDL 550
           HC   A   +  WN  K +WFV+   +  H     N         + ++SDS+  Q  +L
Sbjct: 455 HCGCLAKLEIE-WNEEKGVWFVKEFNNQ-HTHELANPDHVAFLGVHRVVSDSKKAQAVEL 512

Query: 549 K 547
           +
Sbjct: 513 R 513


>12_01_0031 - 264610-265986
          Length = 458

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
 Frame = -1

Query: 720 TNAPYGLPYWNANKPLW--FVRSIGDPFHIQPYPNSPEGVIFNRYNIISDSQPVQPFDLK 547
           T+A   L    A  P W  +  ++     + P+   P   +   Y +   +Q + PF L 
Sbjct: 48  TSAFMALYAMAATMPCWALWAHNMAFGHRLLPFVGRPAPALAQHYML---TQALLPFTLH 104

Query: 546 FHNDRWTSTTDLHYFYPSIRQ--YNWFPSGLSKGSAA 442
            H++    T  +   YPS     + W  +G++ G  A
Sbjct: 105 LHSNGEVETAAVAPLYPSASMVFFQWASAGVTVGLVA 141


>08_02_0556 +
           18592393-18592580,18592839-18593031,18593110-18593499,
           18593576-18593686,18593789-18593867,18594048-18594109,
           18594182-18594238,18594498-18594581
          Length = 387

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 321 IDETVSKPAAKTHKNETNEPSSLTV 247
           +++TV K  A+TH ++ N PSS  V
Sbjct: 327 LEQTVDKDKAETHSHDANGPSSSVV 351


>04_03_0222 +
           12928470-12928779,12931919-12932052,12932352-12932548,
           12932807-12932999,12933078-12933467,12933544-12933623,
           12933757-12933851,12933869-12934077,12934150-12934206,
           12934466-12934549
          Length = 582

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 321 IDETVSKPAAKTHKNETNEPSSLTV 247
           +++TV K  A+TH ++ N PSS  V
Sbjct: 522 LEQTVDKDKAETHSHDANGPSSSVV 546


>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
          Length = 512

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = -1

Query: 570 PVQPFDLKFHNDRWTSTTDLHYFY---PSIRQYNWFPSGLSKGSAAVQVEMPSLTNNVCH 400
           PV  +D          T+D+  FY   P+           S+ S + Q ++  +    CH
Sbjct: 260 PVSCYDSLERAFAEAGTSDMERFYCPFPNCSVLLDLSQHFSRASTSSQSDLNCVECPECH 319

Query: 399 YEIVCNCGVK-RTKLNCNCRDDASAMSIDE 313
            +I  NCGV     + C   D+  ++ +DE
Sbjct: 320 RDICINCGVPWHVMMGC---DEYQSLPVDE 346


>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 750 TPVTHGI-HCPTNAPYGLPYWNANKPLWFVRSIGDPFHIQPYPNSPE 613
           T  TH   H PT   Y +     N+P +     G  +H+Q Y ++PE
Sbjct: 663 TTYTHVFPHSPTGKYYLVDSGYPNRPGYLAPYKGTKYHLQEYRDAPE 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,585
Number of Sequences: 37544
Number of extensions: 375800
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)