Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e06
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.6  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   9.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   9.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 540 NDRWTSTTDLHYFYPSIRQYN 478
           ND W  T +  YF P    YN
Sbjct: 207 NDSWRITHNFFYFDPRYGNYN 227


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 773 GVFFSISSHQSPTVYTVQPTHLMGYLIGMQINPCGSYA 660
           GVF+ +S+  +P +Y +           M  N CG ++
Sbjct: 334 GVFYYLSTTVNPLLYNIMSNKFREAFKLMLPNCCGKWS 371


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 573 QPVQPFDLKFHNDRWTSTT 517
           QP   F+L  + D WT T+
Sbjct: 32  QPRPSFELSKNGDEWTFTS 50


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 573 QPVQPFDLKFHNDRWTSTT 517
           QP   F+L  + D WT T+
Sbjct: 34  QPRPSFELSKNGDEWTFTS 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,752
Number of Sequences: 438
Number of extensions: 4781
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)