Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e02
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.1  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   1.9  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   4.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   4.4  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    24   5.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   5.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   5.8  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    24   7.6  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 99  VLLK*SLNIREKITMKIVCFNCI 31
           V++K +LN  E++T++I C +CI
Sbjct: 570 VIVKPALNPAERMTVRICCHDCI 592


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 124 SIWWTRGKSATSAHCWVAR 180
           SIWW+  + AT  + W++R
Sbjct: 67  SIWWSLSRKATRFYRWLSR 85


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 325 RVRQISEDKNLFLLDPST*ISVLNHNG 245
           RVR+   DK+L L+  +T IS LN +G
Sbjct: 77  RVRKFLTDKHLMLMTLATGISRLNLSG 103


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 150 AFPSCPPY*FL*SKETRVLLK*SLNIREKITMKIVCFNC 34
           + PS PP   L   +T V +K  L++ +  T++I  FNC
Sbjct: 697 SLPS-PPSGLLGPTDTAVFVKPDLSLEKLPTLEINTFNC 734


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 89  FKSTLVSFDYRNQY-GGQEGKAPHPPIVGLQG 181
           F   LVS  Y   Y GG EGK PH P  G+ G
Sbjct: 61  FIINLVSPIYEYLYWGGLEGKKPHYP-SGIHG 91


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 64  LFTNVEALFQKHSRLF 111
           +F NVE++ Q HSRLF
Sbjct: 515 VFGNVESIRQLHSRLF 530


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 178 LQPNNGRMWRFSLLSTILIPVIKRDESAFE 89
           L  +NG+ WR  ++S  + P+ K  + +FE
Sbjct: 72  LSQDNGQSWRNGVISGQVCPIKKLIKHSFE 101


>SPCC1259.09c |||pyruvate dehydrogenase protein x
          component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 22 KKNDTIKTNYFHCYLFTNVEALFQ 93
          K + ++K  YFHC     V ++F+
Sbjct: 16 KHSLSVKQRYFHCSALNGVASMFR 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,584
Number of Sequences: 5004
Number of extensions: 23823
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)