Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15e02
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    31   0.17 
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    31   0.17 
U10414-10|AAA19077.1|  176|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 224 SEAPKAAVTACIHSNLATQQWADVALFPL---VHHIDSCN 114
           S+ P   + AC+    AT+  +DVALFP    +H   SCN
Sbjct: 799 SDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCN 838


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 224 SEAPKAAVTACIHSNLATQQWADVALFPL---VHHIDSCN 114
           S+ P   + AC+    AT+  +DVALFP    +H   SCN
Sbjct: 799 SDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCN 838


>U10414-10|AAA19077.1|  176|Caenorhabditis elegans Hypothetical
           protein F42A10.6 protein.
          Length = 176

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 182 NLATQQWADVALFPLVHHIDSC 117
           N+AT  W+ V  F L+++ID+C
Sbjct: 91  NMATCGWSSVPTFGLLNNIDAC 112


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
            C49C3.4 protein.
          Length = 1566

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 202  TAALGASDISSVVHCHYDLTLKFKWKDRARKDSCLPIF 315
            TA L  +D +  V   YD    F WKD +     +P F
Sbjct: 966  TATLLITDCNGEVSAKYDSDQIFNWKDNSTFYQFVPFF 1003


>Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical
           protein M153.5 protein.
          Length = 233

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -1

Query: 168 TMGGCGAFPS 139
           T+GGCGAFPS
Sbjct: 138 TIGGCGAFPS 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,288,119
Number of Sequences: 27780
Number of extensions: 131317
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)