Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d24
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 28 1.1
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 3.3
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 3.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 4.4
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 4.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 5.8
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 7.7
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 25 7.7
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 634 PPPKNYDHIEIPERQRL 584
PPP+N DH+++PE +L
Sbjct: 4076 PPPENEDHLDLPEDLKL 4092
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 513 YLSLFCILGGFKFGGYCGTLSYTR 584
Y + FC GG FGGY G Y R
Sbjct: 448 YNTYFCFAGGAGFGGYGGHGGYVR 471
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 3.3
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Frame = -3
Query: 562 QYPP-NLKPPKMQK-RLRYMRGPEEVHTTLQLKQYGVRATGGG-RMKHEHFEMARLVVAR 392
QY P +++ K QK R+ G T L+ +YG+R R + E A ++ R
Sbjct: 39 QYAPRSIRNQKAQKGRVPIPIGGSLRGTQLEWGEYGMRLKDRSIRFHAKQLETAEQILKR 98
Query: 391 KLDMKRMFAIWRIDPPWQPITXXXXXXXXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAE 212
L + ++ P+ GA +++ I GR++ E+GG E
Sbjct: 99 ILKPIKAARVYTRFCCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 211 VHD-MLRIISERLPFKAEPVSEE 146
+ + L+ + LP K E + ++
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 124 EEKWLEENNQNEYTMKYIIQNNMGG 50
EEKW+ + + TM+ II+N++ G
Sbjct: 201 EEKWVSRSQRLSVTMRRIIENHVFG 225
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 598 ERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTLQL 473
ER+ L Y P Y P+++PPK +K+ +GP T++L
Sbjct: 3 ERKVLNKYIP-PDYDPSIRPPKKKKK---FQGPNGGKLTVRL 40
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 220 YAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEE 104
Y + + R+++ L K E + + ILE +A +E +LEE
Sbjct: 844 YTYLAESKRMLANELQMKQEDLEKVILELEAYKEIFLEE 882
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Frame = +3
Query: 381 MSNFLATTKRAISKCSCFILPPPVARTPYCFNCNVVWTSSGPLMYLSL-------FCILG 539
M +TTK C L + R +CF V S + LSL F
Sbjct: 582 MGQCFSTTKEINRFCVDISLQDDIVRNNHCFTDGVGMASLSVIRRLSLEVKNHDMFPSAF 641
Query: 540 GFKFGGYCGTLS 575
F+ GGY G LS
Sbjct: 642 QFRMGGYKGVLS 653
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +3
Query: 87 YSFWLFSSNHFSSAAFCSKISSETGSALKGNLSDIILNMSCTSAYSHLPPTSRMILP 257
Y + FSS HF + S+ISS GS G L ++ + +S+++ + P +++P
Sbjct: 700 YVVYYFSSLHFGA----SQISSAIGSFAVGCLGNMYSHFIKSSSFAVVLPAIFVLVP 752
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 351 SILQMANIRFMSNFLATTKRAISKCSCFILPPPVARTPYCFNC 479
++L+MA + +F AISK C ++PP + RT C
Sbjct: 193 ALLEMAITNYAMDF------AISKGWCPVIPPTIVRTDIALAC 229
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 619 YDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKR 521
Y + E+P R RL ++ P N P K++ R
Sbjct: 35 YRNPELPLRVRLEAKKRIEALPTNAHPTKIKNR 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,397
Number of Sequences: 5004
Number of extensions: 64626
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -