Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d24
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    29   2.6  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    29   3.4  
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392     28   6.0  
08_01_0079 - 554936-554977,555108-555297,555384-555430,556039-55...    28   6.0  
05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183     28   6.0  
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652...    28   6.0  
11_06_0584 - 25220371-25222917                                         28   7.9  
04_03_0503 - 16611860-16611961,16612506-16612615,16612879-16612954     28   7.9  

>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 235 GGKCEYAEVHDMLRIISERLPFKAEP 158
           G  CEYA   D LR+I  R  ++ EP
Sbjct: 537 GDGCEYAHSQDELRVIDARPKYRTEP 562


>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
            295071-295646,295828-296260,296470-297338,297433-298227,
            298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 69   IIYFIVYSFWLFSSNHFSSAAFCSK 143
            ++YFIV+SF+L S+  F S A CS+
Sbjct: 1232 VVYFIVFSFFLVSA-RFGSCAPCSE 1255


>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
          Length = 271

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 90  SFWLFSSNHFSSAAFCSKISSETGSALKGNLSDIILNMSCTSAY 221
           S W   SNH   A F  +I S++G  L  N + I  N S  S Y
Sbjct: 222 SIWRLDSNHRLQAPFSLRIRSDSGKTLVAN-NVIPANWSPNSNY 264


>08_01_0079 -
           554936-554977,555108-555297,555384-555430,556039-556139,
           556223-556271,556432-556494,556602-556695,556822-556924,
           557719-557791,557872-557984,558068-558149,558386-558913,
           559015-559098,560156-560305,561021-561191,561759-561809,
           562601-562738,562823-562894,563236-563391,563681-563839,
           564080-564180,564577-564829
          Length = 939

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 580 VYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTL 479
           +Y  +P+ PP   P +M  RL Y+R P    T L
Sbjct: 879 LYRDIPEEPPTDDPERMPIRLFYVRDPIAEETPL 912


>05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183
          Length = 204

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 493 VHTTLQLKQYGVRATGG 443
           ++TTLQL ++GVR TGG
Sbjct: 108 IYTTLQLVRHGVRLTGG 124


>03_02_0218 -
           6522330-6522458,6523257-6523328,6523555-6523707,
           6524370-6524543,6525655-6525835,6525923-6525990
          Length = 258

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 280 HYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEEN 101
           H V    +GR+ ++VG   ++ +     R  S  +   A P +   L+ + A      +N
Sbjct: 79  HLVMEDATGRVCIQVG-YLKWTKRSSSCRCSSGLVGTPAAPDASATLKTRIARVPARHKN 137

Query: 100 NQNEYTMKYIIQNNMG 53
            +NE  MK+  +N +G
Sbjct: 138 EENEQGMKWSYENLIG 153


>11_06_0584 - 25220371-25222917
          Length = 848

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
 Frame = -3

Query: 547 LKPPKMQKR---LRYMRGPEEVHTTLQLKQY----GVRATG---GGRMKHEHFEMARLVV 398
           L PPK+ K    LR+++  +     LQL       G+R  G    GR   ++ ++    +
Sbjct: 563 LMPPKISKNTEILRHIQIKDGPEAQLQLSHVASLDGLRKLGVVLDGR--EDNIKLLLTTI 620

Query: 397 ARKLDMKRMFAIWRIDPP 344
           AR+ D  R  ++W  +PP
Sbjct: 621 ARRSDTLRSLSVWITEPP 638


>04_03_0503 - 16611860-16611961,16612506-16612615,16612879-16612954
          Length = 95

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +1

Query: 328 WLWVAM-EDLFSRWQTYVSCLISWQQLSEPFQNVRVSFFHLQWHGHHIVSTVMLC 489
           W  V   +++   W      L  WQ++  P   V + FF L   G+  +    LC
Sbjct: 30  WAQVVFGKEILGEWHLRSGILRGWQKVISPHSEVELVFFFLFMEGYLTLLRRRLC 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,544,693
Number of Sequences: 37544
Number of extensions: 424264
Number of successful extensions: 1211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)