Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d24
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457117-1|CAG33398.1| 251|Homo sapiens MRPL16 protein. 171 2e-42
BC019269-1|AAH19269.1| 251|Homo sapiens mitochondrial ribosomal... 171 2e-42
BC001040-1|AAH01040.1| 251|Homo sapiens mitochondrial ribosomal... 171 2e-42
AK000491-1|BAA91202.1| 251|Homo sapiens protein ( Homo sapiens ... 171 2e-42
AF183428-1|AAG09697.1| 251|Homo sapiens 28.4 kDa protein protein. 171 2e-42
AB049642-1|BAB40847.1| 251|Homo sapiens mitochondrial ribosomal... 171 2e-42
AF275806-1|AAG23818.1| 54|Homo sapiens PNAS-111 protein. 36 0.13
U77494-1|AAB67052.1| 1037|Homo sapiens RANBP8 protein. 30 8.8
>CR457117-1|CAG33398.1| 251|Homo sapiens MRPL16 protein.
Length = 251
Score = 171 bits (416), Expect = 2e-42
Identities = 88/223 (39%), Positives = 127/223 (56%)
Frame = -3
Query: 670 AQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEV 491
A L AG+K P +++ + IPE+ +LR ++ P P + PK L +RGP
Sbjct: 22 ALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTE 78
Query: 490 HTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXX 311
T + + A GGG + HFEM RL + R +D K MFAIWR+ P++PIT
Sbjct: 79 ATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 138
Query: 310 XXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQK 131
GAIDHYVTP+K+GR+++E+GG+CE+ EV L ++ +LPF A+ VS LE+
Sbjct: 139 RMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKM 198
Query: 130 AAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+++ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 199 RKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 241
>BC019269-1|AAH19269.1| 251|Homo sapiens mitochondrial ribosomal
protein L16 protein.
Length = 251
Score = 171 bits (416), Expect = 2e-42
Identities = 88/223 (39%), Positives = 127/223 (56%)
Frame = -3
Query: 670 AQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEV 491
A L AG+K P +++ + IPE+ +LR ++ P P + PK L +RGP
Sbjct: 22 ALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTE 78
Query: 490 HTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXX 311
T + + A GGG + HFEM RL + R +D K MFAIWR+ P++PIT
Sbjct: 79 ATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 138
Query: 310 XXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQK 131
GAIDHYVTP+K+GR+++E+GG+CE+ EV L ++ +LPF A+ VS LE+
Sbjct: 139 RMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKM 198
Query: 130 AAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+++ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 199 RKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 241
>BC001040-1|AAH01040.1| 251|Homo sapiens mitochondrial ribosomal
protein L16 protein.
Length = 251
Score = 171 bits (416), Expect = 2e-42
Identities = 88/223 (39%), Positives = 127/223 (56%)
Frame = -3
Query: 670 AQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEV 491
A L AG+K P +++ + IPE+ +LR ++ P P + PK L +RGP
Sbjct: 22 ALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTE 78
Query: 490 HTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXX 311
T + + A GGG + HFEM RL + R +D K MFAIWR+ P++PIT
Sbjct: 79 ATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 138
Query: 310 XXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQK 131
GAIDHYVTP+K+GR+++E+GG+CE+ EV L ++ +LPF A+ VS LE+
Sbjct: 139 RMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKM 198
Query: 130 AAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+++ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 199 RKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 241
>AK000491-1|BAA91202.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ20484 fis, clone KAT07770. ).
Length = 251
Score = 171 bits (416), Expect = 2e-42
Identities = 88/223 (39%), Positives = 127/223 (56%)
Frame = -3
Query: 670 AQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEV 491
A L AG+K P +++ + IPE+ +LR ++ P P + PK L +RGP
Sbjct: 22 ALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTE 78
Query: 490 HTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXX 311
T + + A GGG + HFEM RL + R +D K MFAIWR+ P++PIT
Sbjct: 79 ATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 138
Query: 310 XXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQK 131
GAIDHYVTP+K+GR+++E+GG+CE+ EV L ++ +LPF A+ VS LE+
Sbjct: 139 RMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKM 198
Query: 130 AAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+++ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 199 RKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 241
>AF183428-1|AAG09697.1| 251|Homo sapiens 28.4 kDa protein protein.
Length = 251
Score = 171 bits (416), Expect = 2e-42
Identities = 88/223 (39%), Positives = 127/223 (56%)
Frame = -3
Query: 670 AQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEV 491
A L AG+K P +++ + IPE+ +LR ++ P P + PK L +RGP
Sbjct: 22 ALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTE 78
Query: 490 HTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXX 311
T + + A GGG + HFEM RL + R +D K MFAIWR+ P++PIT
Sbjct: 79 ATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 138
Query: 310 XXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQK 131
GAIDHYVTP+K+GR+++E+GG+CE+ EV L ++ +LPF A+ VS LE+
Sbjct: 139 RMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKM 198
Query: 130 AAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+++ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 199 RKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 241
>AB049642-1|BAB40847.1| 251|Homo sapiens mitochondrial ribosomal
protein L16 (L16mt) protein.
Length = 251
Score = 171 bits (416), Expect = 2e-42
Identities = 88/223 (39%), Positives = 127/223 (56%)
Frame = -3
Query: 670 AQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEV 491
A L AG+K P +++ + IPE+ +LR ++ P P + PK L +RGP
Sbjct: 22 ALLPASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTE 78
Query: 490 HTTLQLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXX 311
T + + A GGG + HFEM RL + R +D K MFAIWR+ P++PIT
Sbjct: 79 ATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGH 138
Query: 310 XXXXXXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQK 131
GAIDHYVTP+K+GR+++E+GG+CE+ EV L ++ +LPF A+ VS LE+
Sbjct: 139 RMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKM 198
Query: 130 AAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+++ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 199 RKDQEERERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 241
>AF275806-1|AAG23818.1| 54|Homo sapiens PNAS-111 protein.
Length = 54
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = -3
Query: 136 QKAAEEKWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+K EE+ E NNQN +T + I NM G K+LSP+D KY
Sbjct: 2 RKDQEER--ERNNQNPWTFERIATANMLGIRKVLSPYDLTHKGKY 44
>U77494-1|AAB67052.1| 1037|Homo sapiens RANBP8 protein.
Length = 1037
Score = 29.9 bits (64), Expect = 8.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 616 DHIEIPERQRLRVYDK--VPQYPPNLKPP 536
DH+E P RQ +Y K V QY P+ +PP
Sbjct: 46 DHVEFPVRQAAAIYLKNMVTQYWPDREPP 74
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,291,518
Number of Sequences: 237096
Number of extensions: 2455904
Number of successful extensions: 5704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5694
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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