Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d24
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-9|CAA84730.1| 219|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 31 0.58
CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical ... 29 3.1
Z75955-11|CAB00125.1| 412|Caenorhabditis elegans Hypothetical p... 29 4.1
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 5.4
U97007-8|AAB52293.1| 323|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF003132-3|AAB54135.1| 419|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z35663-9|CAA84730.1| 219|Caenorhabditis elegans Hypothetical
protein T04A8.11 protein.
Length = 219
Score = 119 bits (287), Expect = 2e-27
Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 4/219 (1%)
Frame = -3
Query: 646 LKYFPPPKNYDHIEIPERQRLR--VYDKVPQYPPNL--KPPKMQKRLRYMRGPEEVHTTL 479
+K + P Y+++ P +L+ V P Y K K KR+ RG EEVHT L
Sbjct: 1 MKKYSFPVTYENVRFPPNGQLKLPVMPAEPFYDAEKGEKKYKSTKRMIEARGVEEVHTEL 60
Query: 478 QLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXXXXXX 299
+QYG+ A GG + + F+ + + + L + F++WR+D PW P T
Sbjct: 61 IHEQYGLAAVSGGFIDSDDFKFIQDRINKNL-IDNQFSVWRVDAPWLPRTKKAQGTRLGG 119
Query: 298 XXGAIDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQKAAEE 119
G+I YVTP+++ RIILEVGG E L + ER F E VSE +L ++ +
Sbjct: 120 GKGSIQKYVTPVRANRIILEVGGHITEIEAKAFLLYLCERFSFPVEFVSETMLAERRKKA 179
Query: 118 KWLEENNQNEYTMKYIIQNNMGGCHKMLSPFDHKWYTKY 2
+ N+N + +I+ NM C+ LS +D W KY
Sbjct: 180 EEERAMNKNGFNWGKVIKYNMQNCNSWLSSYDVAWKGKY 218
>Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical
protein R06C1.3 protein.
Length = 468
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 634 PPPKNYDHIEIPERQRLRVYDKVPQYPPNLKPPKMQKRLRYMRGPEEVHTTLQ 476
PPP N DH+ P+ L + D PP PP + + P E +T+Q
Sbjct: 294 PPPVNLDHLPPPDMSILSIDDDDDDLPPP-PPPLLMNTSIVHQLPAEAPSTIQ 345
>CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical
protein C42C1.8 protein.
Length = 544
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 471 FNCNVVWTSSGPLMYLSLFCILGGFKFGGYCGTLSY 578
F +W S P M L LF I G F G+CG +Y
Sbjct: 374 FGVGFLWMSKVPNMSLILFFISGAF---GFCGLAAY 406
>Z75955-11|CAB00125.1| 412|Caenorhabditis elegans Hypothetical
protein R07B7.16 protein.
Length = 412
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +3
Query: 54 PILFCIIYFIVYSFWLFSSNHFSSAAFCSKISSETGSALKGNLSDIILNMSCTSAYSHLP 233
P L C+ Y ++S L + + F SKIS E L ++S I NM S H
Sbjct: 205 PKLICMTY--MHSALLAAVEASKTFEFFSKISHEARMILIRHVSLIGSNMMSASFSMHHR 262
Query: 234 PTSRMILPD 260
+ ++LPD
Sbjct: 263 KSDELLLPD 271
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -3
Query: 673 KAQLTLVAGLKYFPPPKNYDHIEIPERQRLRVYDKVPQYPPNLK----PPKMQ 527
+A L L KY PK+ D IE +R V D V +PP L+ PPK++
Sbjct: 428 EAILDLGVAFKYIEDPKSLDAIETYKR---NVADYVEAHPPPLEMFKAPPKVE 477
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 640 YFPPPKNYDHIEIPERQRLRVYDKVP-QYPPNLKPPKMQKRL 518
YFP PK + +++ +R+ R+ +Y P +K PK+QKR+
Sbjct: 2215 YFPNPK-LEKVKLSQRKPSRISSASDSEYCPIVKFPKVQKRV 2255
>U97007-8|AAB52293.1| 323|Caenorhabditis elegans Hypothetical
protein ZC196.2 protein.
Length = 323
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 250 IILEVGGKCEYAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEENNQNEYTMKYI 71
IIL G ++ +D + S R + VS++ + K L+ENN+N ++KY
Sbjct: 122 IILGTGSSPDFR--NDQIASESSRQSSPIQNVSDDGKSSHHSTAKQLQENNENSKSLKYT 179
Query: 70 IQ 65
Q
Sbjct: 180 KQ 181
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 551 WRILWHFIIYPQPLSFGYFNMVIIFWRR 634
W I+W +IY P S N + IF ++
Sbjct: 97 WAIMWRQLIYENPSSIECLNQIRIFTKQ 124
>AF003132-3|AAB54135.1| 419|Caenorhabditis elegans Hypothetical
protein F37E3.3 protein.
Length = 419
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 129 AFCSKISSETGSALKGNLSDIILNMSCTSAYSHLPPTSRMILPD 260
AF K+S E+G G L + IL +YS P +L D
Sbjct: 325 AFTRKLSKESGVFTLGRLFEQILESEILKSYSEPPQEEPRVLND 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,832,279
Number of Sequences: 27780
Number of extensions: 371242
Number of successful extensions: 1281
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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