Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d24
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 382 CLISWQQLSEPFQNVRV 432
           CLISW  L +P Q +++
Sbjct: 429 CLISWNPLMQPKQPIKL 445


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/56 (16%), Positives = 23/56 (41%)
 Frame = -3

Query: 220  YAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEENNQNEYTMKYIIQNNMG 53
            Y     +++++ +  P     +   ++  ++   KW  ++       KYI+Q   G
Sbjct: 893  YGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKEG 948


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/56 (16%), Positives = 23/56 (41%)
 Frame = -3

Query: 220  YAEVHDMLRIISERLPFKAEPVSEEILEQKAAEEKWLEENNQNEYTMKYIIQNNMG 53
            Y     +++++ +  P     +   ++  ++   KW  ++       KYI+Q   G
Sbjct: 889  YGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKEG 944


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 442 HLQWHGHHIVSTVM 483
           HLQ H HH+ ST +
Sbjct: 143 HLQNHHHHLQSTAV 156


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 513 YLSLFCILGGFKFGGYC 563
           Y+++  I+GG +FG  C
Sbjct: 632 YITIEAIIGGGEFGDVC 648


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 374 YVCHLENRSSMATHNQERTRSANGWW 297
           YVC  EN +  A+H+   T +    W
Sbjct: 656 YVCTAENAAGTASHSTTLTVNVPPRW 681


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 543 NHPRCRRDSDT*EDQRKSTQHY 478
           +HPR +R   T E +   ++HY
Sbjct: 155 HHPRYKRPRTTFEPRATDSRHY 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 168 LKGNLSDIILNMSCTSAYSHLPPTSRMILPD 260
           LKG  +  I  +SC + +S L   S  +L +
Sbjct: 412 LKGPANPDIFRVSCATEHSQLTNISEEVLKE 442


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 168 LKGNLSDIILNMSCTSAYSHLPPTSRMILPD 260
           LKG  +  I  +SC + +S L   S  +L +
Sbjct: 118 LKGPANPDIFRVSCATEHSQLTNISEEVLKE 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,608
Number of Sequences: 438
Number of extensions: 4731
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)