Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d22
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    44   2e-05
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    35   0.012
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    30   0.45 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    29   0.59 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   3.2  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   3.2  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   7.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.7  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 827

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
 Frame = -3

Query: 414  LARIDTELYPKKVASVVSEVSQYMKECLEMKTYT--PLCREKKIPKALRLYEPDVQEVFT 241
            L  +  EL  K+++  +    Q + + +E       PL  +   P  +    P  +E ++
Sbjct: 695  LYSLKKELLSKRLSEKLLSTLQAVSDSIESAKANRKPLALQSHRPLGITSQVPKFEEGYS 754

Query: 240  GSKGSK-LSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVK 64
              K S  +  E+A+  +L+ + +   KGA+R +R+D  +IA  + +E+   D    EK++
Sbjct: 755  LDKSSHDIDPERAQLNKLRAQHRDAKKGAIRTLRKDARFIARERRQEQRAKDQAYNEKMR 814

Query: 63   QI 58
            ++
Sbjct: 815  KL 816


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 21/83 (25%), Positives = 45/83 (54%)
 Frame = -3

Query: 252 EVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKE 73
           EV + ++ +K      +   +K  +K    GALR  +R+++  A++   +     N+R+E
Sbjct: 751 EVASMAQFAKDQEMDRDEKLVKQLMKDVTTGALR--KRNRNGFAALDDSDDEDYSNLRRE 808

Query: 72  KVKQIYKEAAIQQGELNKLKRSK 4
           K+K++ ++  ++ G LN L+  K
Sbjct: 809 KLKELRRQKLLEDGNLNVLEGDK 831


>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -3

Query: 243 TGSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRS 91
           +GSK SK+   + + AR+ T + +  + A RE  ++K YI     ++K R+
Sbjct: 39  SGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRA 89


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -3

Query: 264 PDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASV--KLKEKMRS 91
           PD+  V + S  S    +   A   +TK    ++ A  E +R ++  AS   ++K+K++ 
Sbjct: 230 PDLASVSSPSLSSYKGAQSPNANSKRTKATSAIRTAAEEDKRRRNTAASARFRIKKKLKE 289

Query: 90  DNIRKEKVKQIYKEAAIQQGELNKLK 13
             + +   K++ ++ AI +  + +L+
Sbjct: 290 QQLER-TAKELTEKVAILETRVRELE 314


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -3

Query: 300 EKKIPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIA 121
           E++  +A RL E   Q+    +K  + +R++ E  RLK + +K+ +   R+ R +K    
Sbjct: 611 ERQRREAERLAEQAAQKALE-AKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQK 669

Query: 120 SVKLKEKMRSDNIRKEKV 67
             + K K +     +EK+
Sbjct: 670 EREKKLKKQQQEADREKM 687


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 180 LKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVK 64
           LK+ +K  LR+ R D+    +  LKEK+   N   EKV+
Sbjct: 204 LKENLKSELRKGRLDELMCENTALKEKIDKLNKELEKVE 242


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 189 KTKLKKEMKGALREIRRDKSYIASVKLKE-KMRSDNIRKEKVKQIYKEAAIQQGELNKLK 13
           K  L K  K ++ E++R     ASVK KE K + ++ + +K K    +  I + +  K K
Sbjct: 44  KAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSK 103

Query: 12  RSK 4
           + K
Sbjct: 104 KGK 106


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 255 QEVFTGSKGSKLSREQAEAARLKTKLKKEMK-GALREIRRDK 133
           Q +    +  + +R++ E  + +TK KKEMK  AL +I  D+
Sbjct: 279 QSLLAERRNKRYTRKEMEQMKRRTKEKKEMKRRALYDIASDE 320


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 415 VSQDRYRIVPQEGGQCRFRSKSVHERVLRNENLHS 311
           ++ DR  +VP    +    S S+H  V +N++ HS
Sbjct: 708 MNNDRSFLVPSRDARNSLTSLSLHSNVAKNKSSHS 742


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = -3

Query: 729 RLVPSALNYLRGILYY---CANTSI-LNQVQLVPPFMLHKMEKILNLNTDCSKMSVANKM 562
           RL  SA ++L  + ++   CAN S+ L++    P F+ +        N   S +S A + 
Sbjct: 310 RLQQSAEDFLYHLQFFFTLCANNSLYLSRFCYYPSFVPNTPFGGKWTNNGLSAVSSAYRT 369

Query: 561 AAKDLILESVDDDFKIRCLLISTVMLKEFFDNFNELEAQECMFE 430
              +  L  +D     +C+        EF +NF++   +E +FE
Sbjct: 370 RLLEPCLPELD-----KCVWFLLKNCDEFIENFSDFADEEYVFE 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,673
Number of Sequences: 5004
Number of extensions: 59793
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)