Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d22
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 68 1e-11
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 37 0.017
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 33 0.20
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 33 0.27
07_03_0963 + 22949898-22949985,22950295-22950364,22951204-229512... 30 1.9
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 30 2.5
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 30 2.5
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 30 2.5
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494... 29 3.3
01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804... 29 3.3
12_02_0466 + 19403855-19404347,19404359-19404582,19404659-194050... 29 4.4
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 29 4.4
11_06_0093 + 19999503-20000231,20000308-20000742,20000829-200016... 29 4.4
06_03_0046 - 15852653-15854560 29 4.4
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 4.4
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 29 5.8
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 5.8
11_04_0172 - 14474674-14474761,14474842-14475012,14475090-144755... 28 7.7
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 28 7.7
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 28 7.7
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037... 28 7.7
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 28 7.7
>03_05_0223 - 22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 67.7 bits (158), Expect = 1e-11
Identities = 63/258 (24%), Positives = 125/258 (48%), Gaps = 14/258 (5%)
Frame = -3
Query: 735 SKRLVPSALNYLRGILYYCANTSILNQVQ--LVPPFM-LHKMEKILNLNTDCSKMSVANK 565
SK+ P A+ +L+ +L ++ + ++ + F+ L ME L+++ +++ AN
Sbjct: 670 SKKFCPEAVVFLQSLLVTSLGGNLGSDLRKKINDQFLELKTMEPWLHIHEKVHEVNPANI 729
Query: 564 MAAKDLILESV---DDDFKIRCLLISTVMLKEFFDNFNELEAQECMFEYHIKLLARI-DT 397
+ + ++ D+FK LL L+ F EL + +F L+ I D
Sbjct: 730 LEVICMDSDAPYFSSDNFKASVLLSVAECLRGFVIIHEELCSFPEIFLPISSLMQEIMDK 789
Query: 396 ELYPKKVASVVSEVSQYMKECLEM--KTYTPLCREKKIPKALRLYEPDVQEVFTGSKGSK 223
P + ++ EV + +K + + PL K+ P+ +R P +E +
Sbjct: 790 SDLPGLLQYILHEVIELIKNRSDEVHASRQPLQMRKQKPEPIRQLNPKFEENYIKGLDYD 849
Query: 222 LSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIY---- 55
RE+A+ ++K +LK E KGA+RE+R+D ++++VK KE+++ + R EK +
Sbjct: 850 PDRERAQMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQERAEKYGKAMAFLQ 909
Query: 54 -KEAAIQQGELNKLKRSK 4
+E A + G+L K ++ +
Sbjct: 910 EQEHAFKSGQLGKGRKRR 927
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 37.1 bits (82), Expect = 0.017
Identities = 17/60 (28%), Positives = 39/60 (65%)
Frame = -3
Query: 225 KLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEA 46
+L +++ E AR++ + KK+ + ALRE +R + A +K +++ + + +KE+ ++ +EA
Sbjct: 344 ELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEA 403
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 33.5 bits (73), Expect = 0.20
Identities = 28/107 (26%), Positives = 54/107 (50%)
Frame = -3
Query: 354 SQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLKTKLK 175
S+ +K E++ + R K++ K L ++V + + R + E L+ K K
Sbjct: 434 SEEVKIAKEVEAHEKRIR-KELEKQDMLNRKREEQVRREMERNDRERRKEEERLLREKQK 492
Query: 174 KEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAIQQ 34
+E + RE RR+ + LK+ +R++ IR+++ + KEAA Q+
Sbjct: 493 EEERFQ-REQRREHKRMEKYLLKQSLRAEKIRQKEELRKEKEAARQK 538
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 33.1 bits (72), Expect = 0.27
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = -3
Query: 237 SKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQI 58
S + RE+ A L+ ++++ ++ +L + DK + KLKEK+ NI +EKV +
Sbjct: 281 SLSEEFRREKTLAEELREEIRR-LESSLAQAGDDKD-VLEAKLKEKLGDVNILQEKVSLL 338
Query: 57 YKE---AAIQQGELNKLKRSK 4
+E I+ EL+ L SK
Sbjct: 339 SQEIDNKGIRIRELSSLLSSK 359
>07_03_0963 +
22949898-22949985,22950295-22950364,22951204-22951270,
22951361-22951456,22951796-22951893,22951921-22952089,
22952899-22952940,22953967-22954023,22954116-22954166,
22954284-22954340,22954522-22954539
Length = 270
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = -3
Query: 219 SREQAEAARLKTKLKKEMKGALREIRRD--KSYIASVKLKEKMRSDNIR 79
S + E A+ KL +E K A+R IRRD K+Y ++ ++K+ DN++
Sbjct: 192 SDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAY-DKLEKEKKLSEDNVK 239
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = -3
Query: 456 LEAQECMFEYHIKLLARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKAL 277
L++ EC+ +K + Y + ++VS +Y ++C+++ P + P L
Sbjct: 931 LKSLECLPPAIMKYTVDLRLGRYESALKNIVSAGDEYHEDCMKLLNANP----QLFPLGL 986
Query: 276 RLY-EPDVQEVFTGSKGSKLSREQAEA 199
+L+ +PD + + G +LS E+ A
Sbjct: 987 QLFTDPDKRHQILEAWGDQLSEEKCFA 1013
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Frame = -3
Query: 384 KKVASVVSEVSQYMKECLEMKT-YTPLCREKKIP-----KALRLYEPDVQEVFTGSKGSK 223
K+V+++ +E + M+ YT L ++KKI +A + + +++E+ +KG++
Sbjct: 187 KEVSALRAENDFVWNQLRTMENDYTDLLKKKKIEAAQATEAAQKLQKNLEELQDQNKGNE 246
Query: 222 LSREQAEAARLKTK---LKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQ 61
+ R QAEA K L+ +++ L ++ I +K + M S I K+ + Q
Sbjct: 247 IGRLQAEAVDAKMNISILEDKLQEMLSLVKEKDLEIEQLKHGQPMTS-QINKKDINQ 302
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -3
Query: 237 SKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQI 58
SKG + AE E++G L E+R +K K +E +R R E +++
Sbjct: 54 SKGKAAAAAAAEEQASVVDAVSELQGMLEELRLEKE-----KAEEMVRE---RDEVIRRK 105
Query: 57 YKEAAIQQGELNKLKRSK 4
+E Q EL K++R+K
Sbjct: 106 EEEQGRLQAELKKVQRAK 123
>04_03_0116 -
11448012-11448525,11448693-11448763,11449139-11449421,
11449520-11449672,11449750-11450219,11451470-11451631,
11451718-11451987,11452229-11452633
Length = 775
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -3
Query: 300 EKKIPKALRLYEPDVQEVFTGS-KGSKLSREQAEAARLKTKLKKEMKGALRE 148
+K L P+ Q V+ K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 114 KKNSDGTLSFPNPEDQVVYQKIYKKHKLSKAQ-KAARIKAQLREELKEELRE 164
>01_05_0491 -
22680011-22680125,22680210-22680307,22680392-22680472,
22680564-22680677,22680757-22680823,22680947-22681017,
22681099-22681236,22681324-22681530,22681630-22681773,
22681856-22682017,22682117-22682173,22682256-22682348,
22682425-22682542,22682678-22682817,22683031-22683590,
22683703-22683805
Length = 755
Score = 29.5 bits (63), Expect = 3.3
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Frame = -3
Query: 414 LARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFTGS 235
LAR+ E A + E+ +++ +E + + KA+ P ++E+
Sbjct: 145 LARLRIEQERAAEACRLREMVDVLQQAVEDAEVRVIAEREAAKKAIAEAPPVIKEIVVQV 204
Query: 234 KGS-KLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQI 58
+ K+ AE ARLK L EMK K +A +L+ + + + E+VK
Sbjct: 205 VDTDKVDSLAAEVARLKDLLGAEMKATFDA----KKAVAEAELRNEKLARLLGVEEVKNR 260
Query: 57 YKEAAIQQGEL 25
+ ++++ E+
Sbjct: 261 QLQESLKRMEM 271
>12_02_0466 +
19403855-19404347,19404359-19404582,19404659-19405093,
19405180-19406024,19406353-19406635,19406903-19406977
Length = 784
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 234 KGSKLSREQAEAARLKTKLKKEMKGALRE 148
K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 296 KKHKLSKAQ-KAARIKAQLREELKEELRE 323
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 234 KGSKLSREQAEAARLKTKLKKEMKGALRE 148
K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 244 KKHKLSKAQ-KAARIKAQLREELKEELRE 271
>11_06_0093 +
19999503-20000231,20000308-20000742,20000829-20001670,
20001748-20001916
Length = 724
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 234 KGSKLSREQAEAARLKTKLKKEMKGALRE 148
K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 300 KKHKLSKAQ-KAARIKAQLREELKEELRE 327
>06_03_0046 - 15852653-15854560
Length = 635
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 491 TVLISKQRILKSSSTLSRIKSLAAILFATDILEQSVFK 604
T++ SK+R++ +SS + + KS A + D+L +SVF+
Sbjct: 137 TLVSSKKRLVHNSSKVQKGKSYAQAVQQRDVLVKSVFQ 174
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 29.1 bits (62), Expect = 4.4
Identities = 30/157 (19%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Frame = -3
Query: 480 EFFDNFNELEAQECMFEYHIKLLARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCR 301
E + ++L + +Y I +A I+ L P + + E + + + +
Sbjct: 107 EMIQSNSDLNSVPVEGQYGISQVAGIENSLLPSERRAYHDEDGSRVDRKRKHNEEAKIAK 166
Query: 300 EKKIPKALRLYEPDVQEVFTGSKGSKLSRE--------QAEAARLKTKLKKEMKGALREI 145
E + + E + Q++ + ++ +E + E RL + ++E + LRE
Sbjct: 167 EVEAHERRIRKELEKQDMMKRKREEQMRKEMERHDRERRKEEERLLRERQREQERFLREQ 226
Query: 144 RRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAIQQ 34
RR+ + K+ R++ R+++ + KEAA Q+
Sbjct: 227 RREHERMEKFMQKQSRRAEKQRQKEELRKEKEAARQK 263
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 261 DVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIR 142
D QE G ++ +E A +TK KK M+G +E R
Sbjct: 399 DAQEPLLEDAGQEVRAADSEEAVFRTKTKKGMEGKAKEAR 438
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 234 KGSKLSREQAEAARLKTKLKKEMKGALRE 148
K KLS+ Q +AARLK +L+ E+K LRE
Sbjct: 257 KKHKLSKAQ-KAARLKAQLRVELKEELRE 284
>11_04_0172 -
14474674-14474761,14474842-14475012,14475090-14475517,
14478824-14478961,14479048-14479482,14479559-14479783,
14479860-14480159
Length = 594
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -3
Query: 234 KGSKLSREQAEAARLKTKLKKEMKGALRE 148
K KLS+ Q +AAR+K ++++E+K LRE
Sbjct: 232 KKHKLSKAQ-KAARIKAQIREELKEELRE 259
>11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = -3
Query: 468 NFNELEAQECMFEYHIKLLARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCREKKI 289
N ++ +C F +K + D +++ KKV + ++Y E L + PL E K+
Sbjct: 828 NQKQVLTNDCGF-LAMKYIQFWDGKVFVKKVCP--KDGTKYRAEVLYYILFHPL-NEAKL 883
Query: 288 PKALRLYEPDVQEV 247
P A+ Y P ++++
Sbjct: 884 PAAIERYRPKIRKI 897
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -3
Query: 234 KGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMR 94
K KLS+ Q +AARL +L+ E+K LRE K V+++ ++R
Sbjct: 230 KKHKLSKAQ-KAARLMAQLRVELKEELREELTAKLLGMEVRMEARIR 275
>03_05_0109 -
20903013-20903062,20903406-20903538,20903631-20903726,
20904011-20904168,20904278-20904392,20904486-20904539,
20904818-20904925,20905406-20905495,20905907-20906086,
20906204-20906516,20906619-20906794
Length = 490
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/135 (18%), Positives = 62/135 (45%)
Frame = -3
Query: 447 QECMFEYHIKLLARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKALRLY 268
QE + + ++ +++ E V S+ ++ +Y K+ L ++ +KK ++
Sbjct: 171 QELAAQMEVPMVQQLEAE-----VNSLKQKLVEYNKKQLALRANATAINDKKEETHRKIA 225
Query: 267 EPDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSD 88
+ D + V + SKL + ++ + +E K A E++ + IA ++EK +
Sbjct: 226 KSDFELVKLAQENSKLLSKIVQSPEKLQRALEEKKTARAELKNAEK-IAMQSVQEKTATL 284
Query: 87 NIRKEKVKQIYKEAA 43
I + +++ K ++
Sbjct: 285 EIYSKGYEKLSKHSS 299
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 28.3 bits (60), Expect = 7.7
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -3
Query: 273 LYEPDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALRE---IRRDKSYIASVKLKE 103
L+E D QE + SRE E + K + + K LRE R++K + KE
Sbjct: 705 LFE-DSQE-YKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKE 762
Query: 102 KMRSDNIRKEKVKQIYKEAAIQQGE 28
K + + RKEK + KE +G+
Sbjct: 763 KEKKEKERKEKERDKEKEREKDKGK 787
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936,907
Number of Sequences: 37544
Number of extensions: 372645
Number of successful extensions: 859
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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