Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d22
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024792-2|AAF60680.2| 813|Caenorhabditis elegans Hypothetical ... 54 2e-07
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 37 0.020
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 33 0.18
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 33 0.24
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 33 0.24
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 32 0.42
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 31 0.98
Z73102-15|CAA97416.1| 401|Caenorhabditis elegans Hypothetical p... 30 1.7
Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41558-3|AAK39244.1| 556|Caenorhabditis elegans Innexin protein... 30 2.3
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.0
U43282-1|AAA83613.2| 547|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 29 4.0
AF068709-14|AAC19258.2| 312|Caenorhabditis elegans Serpentine r... 29 4.0
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 5.2
AF026211-5|AAB71289.1| 288|Caenorhabditis elegans Hypothetical ... 29 5.2
Z79694-2|CAB01960.1| 173|Caenorhabditis elegans Hypothetical pr... 28 6.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.9
AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical ... 28 9.1
>AC024792-2|AAF60680.2| 813|Caenorhabditis elegans Hypothetical
protein Y48G1A.4 protein.
Length = 813
Score = 53.6 bits (123), Expect = 2e-07
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 1/171 (0%)
Frame = -3
Query: 516 IRCLLISTVMLKEFFDNFNELEAQECMFEYHIKLLARIDTELYPKKVASVVSEVSQYMKE 337
+R LL L+ + N NE +F+ +++L I + P +V + + MK
Sbjct: 637 LRALLSLIQHLRVIYSNQNE--TYSIVFKPFLRILESIQAKNLPAEVQEELETLCASMKA 694
Query: 336 CLEMKT-YTPLCREKKIPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKG 160
+ K L K L++ EP + F + ++ E +L L+ E +G
Sbjct: 695 EIGAKCRLVHLSLVKTEKSMLKMLEPRFEWDFDPERPHHGPKD--EKKKLTKNLRNERRG 752
Query: 159 ALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAIQQGELNKLKRS 7
A++E+R+D +++A +L D R K++ QQGE NK KR+
Sbjct: 753 AIKELRKDTAFLARKQLSSVKTKDRARIAATKRVMGGLMQQQGEWNKEKRT 803
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = -3
Query: 195 RLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNI---RKEKVKQIYKEAAIQQGEL 25
RLK KL+K +GA R +R K + K K ++R + +KE+++++ K +++ ++
Sbjct: 725 RLKKKLRKRYRGAKRRRKRQKYRLRYRKKKYQLRKGALNMEQKERMRELKKRRRMKKQKI 784
Query: 24 NKLKRSK 4
++L R++
Sbjct: 785 DRLHRNR 791
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = -3
Query: 360 EVSQYMKECLEMKTYTPLCREKKIPK-ALRLYEPDVQEVFTGSKGSKLSREQAEAARLKT 184
++ + K+C E+ E K K + +E ++++ T KG +++++Q+E + +T
Sbjct: 960 DIEKMKKKCEELMEKAIDDEEVKSKKETVERFEKQIKKLQT--KGEEMTKKQSELSAAET 1017
Query: 183 KLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQI 58
KL+ E+K I+ K + + +LK + + KV +I
Sbjct: 1018 KLEGELKKCSEGIKELKESMLADRLKVEDIEKKLAALKVNRI 1059
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 33.1 bits (72), Expect = 0.24
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = -3
Query: 384 KKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFTGSKGSK--LSRE 211
+++ +SEV+ + KE +E E++ K + D E++ K + L R+
Sbjct: 352 RQLEEKISEVNNFKKELIEEFKKCKKGVEEEFEKKFEKIKEDYDELYEKLKRDQRDLERD 411
Query: 210 QAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAIQQG 31
Q + + KE + +R DK + K + + +R EK+K+ +E Q
Sbjct: 412 QKILKKGTGERNKEFTETIATLR-DKLRASETKNAQYRQDIRVRDEKLKKKDEEIEKLQK 470
Query: 30 ELNKLK 13
+ N+LK
Sbjct: 471 DGNRLK 476
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 33.1 bits (72), Expect = 0.24
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = -3
Query: 384 KKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFTGSKGSK--LSRE 211
+++ +SEV+ + KE +E E++ K + D E++ K + L R+
Sbjct: 352 RQLEEKISEVNNFKKELIEEFKKCKKGVEEEFEKKFEKIKEDYDELYEKLKRDQRDLERD 411
Query: 210 QAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAIQQG 31
Q + + KE + +R DK + K + + +R EK+K+ +E Q
Sbjct: 412 QKILKKGTGERNKEFTETIATLR-DKLRASETKNAQYRQDIRVRDEKLKKKDEEIEKLQK 470
Query: 30 ELNKLK 13
+ N+LK
Sbjct: 471 DGNRLK 476
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 32.3 bits (70), Expect = 0.42
Identities = 33/162 (20%), Positives = 70/162 (43%)
Frame = -3
Query: 543 LESVDDDFKIRCLLISTVMLKEFFDNFNELEAQECMFEYHIKLLARIDTELYPKKVASVV 364
++S+ + + +CL+ M K F +N + + ++ L I + KV +
Sbjct: 404 IDSISNTLETKCLIAD--MDKSFLENMKQSAKHVKLLLRKVQALESI-RNAFTSKVINDF 460
Query: 363 SEVSQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLKT 184
+++S K ++ + + R L +Q+ TG++ + L T
Sbjct: 461 NKLSTQTKSS-DVSSIRTVLRSLSQSFKLIQNSKSLQKHVTGAQTLNEVYAEPHTQPLVT 519
Query: 183 KLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQI 58
+L+ MK ++ + S + SVK+ K++SD EK K++
Sbjct: 520 RLECLMK-EIKNTDKIASILRSVKILRKLKSDRKLVEKFKEV 560
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -3
Query: 747 YXVLSKRLVPSALNY---LRGILYYCANTSILNQVQLVPPFMLHKMEKILNLNTDCSKMS 577
+ +SK+L A+ Y G+L + TS+ N +L+P F+L ++ +L ++D +S
Sbjct: 222 HETVSKKLTRIAITYCIVFTGVLSWTVLTSLNNLFRLLPDFLLRFIQPLLLYSSDLMTLS 281
Query: 576 V 574
+
Sbjct: 282 L 282
>Z73102-15|CAA97416.1| 401|Caenorhabditis elegans Hypothetical
protein B0035.14 protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 216 REQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYK 52
R + +L E K + IR K Y +K+ +K D+IRKE K K
Sbjct: 109 RSASRTPKLGVDYTSEQKELVERIRHCKDYYEILKIDKKASDDDIRKEYRKLALK 163
>Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical
protein R03G8.1 protein.
Length = 663
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 381 KVASVVSEVSQYMK--ECLEMKTYTPLCREKKIPK 283
K+ S V V Y K +C+E +T+ P+C K+ PK
Sbjct: 615 KIVSKVERVDSYGKTADCIESETHRPICYCKEQPK 649
>U41558-3|AAK39244.1| 556|Caenorhabditis elegans Innexin protein 7
protein.
Length = 556
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 279 LRLYEPDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIR-RDKSYIASVKLKE 103
L+L VFT + L + E + LK +M L +R D+S + S K
Sbjct: 384 LQLIAQHADVVFTTELIAALFKTYIEIEAQRATLK-QMNAVLPLLRPNDESQVESGKNTA 442
Query: 102 KMRSDNIRKEKVKQIYKEAAIQQGELN 22
S N+R+ +Q+ K +QG L+
Sbjct: 443 PSTSHNVRRRGTEQLEKNVKSRQGSLS 469
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = -3
Query: 420 KLLARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFT 241
KL A++ E+ +K ++ + +++ ++ +++ + ++ K +L VQ
Sbjct: 623 KLEAKLQ-EIEEEKKNALNASLAEKEQQTAQIQELQAQLHQLEVEKEEKLEMVKVQLQQA 681
Query: 240 GSKGSKLSRE-QAEAARLKTKLKKEMKGALREIRRDKSYIASVK-LKEKMRSDNIRKEKV 67
S + + +AE +L+ KL++ K ++ + + + + L EKMR + I KEK+
Sbjct: 682 AQSSSSVEQALRAEIEKLEAKLQEIEKAKMQNSSKREQKVRELSNLNEKMRVEFIAKEKI 741
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = -3
Query: 420 KLLARIDTELYPKKVASVVSEVSQYMKECLEMKTYTPLCREKKIPKALRLYEPDVQEVFT 241
KL A++ E+ +K ++ + +++ ++ +++ + ++ K +L VQ
Sbjct: 623 KLEAKLQ-EIEEEKKNALNASLAEKEQQTAQIQELQAQLHQLEVEKEEKLEMVKVQLQQA 681
Query: 240 GSKGSKLSRE-QAEAARLKTKLKKEMKGALREIRRDKSYIASVK-LKEKMRSDNIRKEKV 67
S + + +AE +L+ KL++ K ++ + + + + L EKMR + I KEK+
Sbjct: 682 AQSSSSVEQALRAEIEKLEAKLQEIEKAKMQNSSKREQKVRELSNLNEKMRVEFIAKEKI 741
>U43282-1|AAA83613.2| 547|Caenorhabditis elegans Hypothetical
protein T22E5.3 protein.
Length = 547
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 375 ASVVSEVSQYMKEC-LEMKTYTPLCREKKIPKAL---RLYEPDV 256
+SV S Q K+ + K Y PLC KIPK + ++++PD+
Sbjct: 16 SSVYSLREQCCKDLGVPEKCYQPLCNPSKIPKVMLRYKIFDPDI 59
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -3
Query: 237 SKGSKLSREQAEAARLKTKLKKEMKGALREIR---RDKSYIASVKLKEKMRSDNIRKEKV 67
+K + +R++ E R + K KKE G E + +DK + + E+ R + +KEK
Sbjct: 433 TKEERKARKEKERERAEKKAKKEKDGHREEEKPKKKDKKHETEEERAERKRKE--KKEKE 490
Query: 66 KQIYKE 49
+Q KE
Sbjct: 491 RQERKE 496
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = -3
Query: 219 SREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAI 40
+RE+ + R K +L++ K +RR++ + +EK +D+ K K +++ +E +
Sbjct: 196 TREELQQQRHKQQLEEYEKRNQEILRREEEIKQQNQEREKQINDDFEKRKQEKLQREEEM 255
Query: 39 QQ 34
+Q
Sbjct: 256 KQ 257
>AF068709-14|AAC19258.2| 312|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 61 protein.
Length = 312
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -3
Query: 747 YXVLSKRLVPSALNYL---RGILYYCANTSILNQVQLVPPFMLHKMEKILNLNTDCSKMS 577
Y ++K+L AL Y GIL + T++ NQ +P F++ + L ++D +S
Sbjct: 218 YEKITKKLTKIALTYCFLYAGILCWTVITALHNQYNFLPSFVIKINQTFLVFSSDLMTLS 277
Query: 576 V 574
+
Sbjct: 278 L 278
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 28.7 bits (61), Expect = 5.2
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = -3
Query: 300 EKKIPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIA 121
EK A R+ E + + K + ++Q E LK K + E K RE+ R+K
Sbjct: 173 EKAEMDAKRVAEEEEERRKEKEKRREEKKKQKEL--LKEKERSERKEKERELEREKE--- 227
Query: 120 SVKLKEKMRSDNIRKEKVKQIYKEAAIQQ 34
K +EK R KE+ K+ KE Q+
Sbjct: 228 --KSREKEREKEREKEREKEREKEREKQK 254
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = -3
Query: 213 EQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQIYKEAAIQQ 34
E+AE + ++E + +E RR++ LKEK RS+ RKEK +++ +E +
Sbjct: 173 EKAEMDAKRVAEEEEERRKEKEKRREEKKKQKELLKEKERSE--RKEKERELEREKEKSR 230
Query: 33 GELNKLKRSK 4
+ + +R K
Sbjct: 231 EKEREKEREK 240
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = -3
Query: 300 EKKIPKALRLYEPDV--QEVFTGSKGSKLSREQA--EAARLKTKLKKEMKGALREIRRDK 133
++K+ + LRL+ QE + S S S E + + K + KKE K L+E+ + +
Sbjct: 170 KEKLLETLRLHRKSKKKQESSSSSSSSSSSSESSSEDEKHRKDRKKKEKKQKLKEMEKRR 229
Query: 132 SYIASVKLKEKMRSDNIRKEK 70
+ + + SD ++KE+
Sbjct: 230 EKLRQKERELLAVSDKVKKEE 250
>AF026211-5|AAB71289.1| 288|Caenorhabditis elegans Hypothetical
protein T13B5.5 protein.
Length = 288
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 164 FISFFSLVFKRAASACSLDNLEPLLPVKTSCTSGSYNLKALGIFFSLHNGV 316
FI + + KR A +D++ PLL KTSC S Y + ++ NGV
Sbjct: 226 FIRDINAIDKRVA-LFHIDSIVPLLLQKTSCGSDPYTIPYSKVYEYDFNGV 275
>Z79694-2|CAB01960.1| 173|Caenorhabditis elegans Hypothetical
protein C15A11.2 protein.
Length = 173
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = -3
Query: 240 GSKGSKLSREQAEAARLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSD----NIRKE 73
G+K +E AE R KTK K+ L + S KEK R D + KE
Sbjct: 2 GNKSKNTKKEGAEKKRSKTKTAKKKTSTLTHSKSVTSTDPKEYEKEKRRDDKDVLRMTKE 61
Query: 72 KV-KQIYKEAAIQQGELNKLKRSK 4
V K+ KEA ++ ++L + +
Sbjct: 62 DVGKERKKEAPKKEQSKDQLVKEQ 85
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = -3
Query: 234 KGSKLSRE-QAEAARLKT-KLKKEMKGALREIRRDK-SYIASVKLKEKMRSDNIRKEKVK 64
K KL +E A+ + K KLK+E L++ + DK A KL +K + DN ++E
Sbjct: 7989 KDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKL-QKEKDDNFKQEANA 8047
Query: 63 QIYKEA--AIQQGELNKLKR 10
++ KE ++Q + +KLK+
Sbjct: 8048 KLQKEKDDKLKQEKDDKLKQ 8067
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = -3
Query: 234 KGSKLSRE-QAEAARLKT-KLKKEMKGALREIRRDK-SYIASVKLKEKMRSDNIRKEKVK 64
K KL +E A+ + K KLK+E L++ + DK A KL +K + DN ++E
Sbjct: 8009 KDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKL-QKEKDDNFKQEANA 8067
Query: 63 QIYKEA--AIQQGELNKLKR 10
++ KE ++Q + +KLK+
Sbjct: 8068 KLQKEKDDKLKQEKDDKLKQ 8087
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 6.9
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = -3
Query: 234 KGSKLSRE-QAEAARLKT-KLKKEMKGALREIRRDK-SYIASVKLKEKMRSDNIRKEKVK 64
K KL +E A+ + K KLK+E L++ + DK A KL +K + DN ++E
Sbjct: 8009 KDDKLKQEADAKLQKEKDDKLKQEADAKLKKEKDDKLKQEADAKL-QKEKDDNFKQEANA 8067
Query: 63 QIYKEA--AIQQGELNKLKR 10
++ KE ++Q + +KLK+
Sbjct: 8068 KLQKEKDDKLKQEKDDKLKQ 8087
>AC024809-5|AAF59544.3| 287|Caenorhabditis elegans Hypothetical
protein Y53G8AR.5 protein.
Length = 287
Score = 27.9 bits (59), Expect = 9.1
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = -3
Query: 366 VSEVSQYMKECLEMKTYTPLCREKKI-PKALRLYEPDVQEVFTGSKGSK--LSREQAEAA 196
+ + ++MKE +E + P+CR + + Y +VQ + K ++ L ++ ++
Sbjct: 160 IQDAQKHMKEQVETNIFCPVCRAQLTDSNTIHNYRENVQLMIKNCKKNQKTLKNKKRRSS 219
Query: 195 RLKTKLKKEMKGALREIRRDKSYIASVKLKEKMRSDNIRKEKVKQ 61
++K +K E +R S I K KEK +I +EK ++
Sbjct: 220 TTTEDVQKTIK-RWHEEQRKLSKIYE-KQKEKGGIIDIEEEKKRR 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,590
Number of Sequences: 27780
Number of extensions: 340007
Number of successful extensions: 982
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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