Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d22
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.5  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           24   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 732 KRLVPSALNYLRGILY--YCANTSILN 658
           K L PS  NY RG+ Y  Y  N S ++
Sbjct: 356 KGLCPSMANYDRGVFYKNYLLNVSFID 382



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 198 QLPPVLLII*SLYFQ*KPPAHPVHTTSKLWVSFSLYTT 311
           QL   LLI+ S  +  K    P +     ++ F++YTT
Sbjct: 678 QLYNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT 715


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -3

Query: 732 KRLVPSALNYLRGILY--YCANTSILN 658
           K L PS  NY RG+ Y  Y  N S ++
Sbjct: 446 KGLCPSMANYDRGVFYKNYLLNVSFID 472



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 198 QLPPVLLII*SLYFQ*KPPAHPVHTTSKLWVSFSLYTT 311
           QL   LLI+ S  +  K    P +     ++ F++YTT
Sbjct: 768 QLYNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT 805


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 441 CMFEYHIKLLARIDTELYPKKVASVVSEVSQYMKEC 334
           CM      +++  +  + P++ ASVV ++  Y+  C
Sbjct: 89  CMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSC 124


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 198  ARLKTKLKKEMKGALREIRRDKSYIASVKL 109
            A  KT+ ++ M+ A R I   KSY+  V++
Sbjct: 1168 ANSKTRRQEMMREAGRGIESAKSYVVDVRV 1197


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 324  SFLSTLSCTDLLRKRHWPPSWGTILY 401
            +FLS  S T +LR   WP +   ILY
Sbjct: 1506 TFLSPNSTTLVLRLHVWPDNGCPILY 1531


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 324  SFLSTLSCTDLLRKRHWPPSWGTILY 401
            +FLS  S T +LR   WP +   ILY
Sbjct: 1502 TFLSPNSTTLVLRLHVWPDNGCPILY 1527


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 233 LLPVKTSCTSGSYNLKALGI 292
           L P   S TSG Y++  +GI
Sbjct: 109 LSPAAVSYTSGFYHIPVIGI 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,017
Number of Sequences: 438
Number of extensions: 4003
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)