Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d19
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 206 1e-53
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 187 1e-47
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 51 1e-06
06_01_0671 - 4899611-4899829,4900870-4901448 42 8e-04
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 36 0.029
01_03_0163 + 13346586-13347809 34 0.16
06_01_0011 + 162301-163218,163349-163987 31 0.83
08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925 31 1.5
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 30 2.5
12_02_0757 + 22845825-22846032,22848331-22848498,22848929-228494... 29 5.9
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 206 bits (504), Expect = 1e-53
Identities = 99/196 (50%), Positives = 129/196 (65%)
Frame = -1
Query: 661 HEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSSHLEWCKD 482
H+++GD + ILFSHP DFTPVCTTELA + EF KR K++G+SCD V SH +W KD
Sbjct: 60 HDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWIKD 119
Query: 481 IKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDNDELDHKGMPLTARAVFIVDPNKKFRL 302
I+++ N YPI+ D RE +L M+D DE D G L +RA+ IV P+KK +L
Sbjct: 120 IEAYKPGNR---VTYPIMADPSREAIKQLNMVDPDEKDSNGGHLPSRALHIVGPDKKVKL 176
Query: 301 SILYPATTGRNFDEILRILDSLQLTDKAKVATPVDWKAGDDCMVLPTVPEDQIKTCFPQG 122
S LYPA GRN DE++R +D+LQ K VATPV+WK G+ ++ P V +D+ K FPQG
Sbjct: 177 SFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVVIPPGVSDDEAKEKFPQG 236
Query: 121 VNVVPLPSGKNYLRKT 74
+ LPSGK YLR T
Sbjct: 237 FDTADLPSGKGYLRFT 252
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 187 bits (455), Expect = 1e-47
Identities = 91/196 (46%), Positives = 123/196 (62%)
Frame = -1
Query: 661 HEWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSSHLEWCKD 482
H+++GD + I+FSHP+DFTPVCTTEL+ + EF KR K++G SCD V SH +W KD
Sbjct: 25 HDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKDWIKD 84
Query: 481 IKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDNDELDHKGMPLTARAVFIVDPNKKFRL 302
I+++ +PI+ D RE +L MID DE D G L RA+ IV P+KK +L
Sbjct: 85 IEAY---KPGRRVGFPIVADPDREAIRQLNMIDADEKDTAGGELPNRALHIVGPDKKVKL 141
Query: 301 SILYPATTGRNFDEILRILDSLQLTDKAKVATPVDWKAGDDCMVLPTVPEDQIKTCFPQG 122
S L+PA TGRN E+LR D+L + +VATPV+WK G+ ++ P V +++ K FP G
Sbjct: 142 SFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERVVIPPGVSDEEAKARFPAG 201
Query: 121 VNVVPLPSGKNYLRKT 74
LPS K YLR T
Sbjct: 202 FETAQLPSNKCYLRFT 217
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 51.2 bits (117), Expect = 1e-06
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = -1
Query: 505 SHLEWCKDIKSFAGCNEDEPFPYPIIEDEKRELANKLGMIDNDELDHKGMPLTARAVFIV 326
SHL W + + G + YP+I D + ++ G++ D+ G+ L R +FI+
Sbjct: 213 SHLAWVQTDRKSGGLGD---LKYPLISDVTKSISKSFGVLIPDQ----GIAL--RGLFII 263
Query: 325 DPNKKFRLSILYPATTGRNFDEILRILDSLQ-LTDKAKVATPVDWKAGDDCM 173
D + S + GR+ DE +R L +LQ + D P WK GD M
Sbjct: 264 DKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSM 315
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = -1
Query: 658 EWLGDKWGILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSS 503
+++G K+ ILF +P DFT VC TE+ EF K NT+++G+S DSV S
Sbjct: 94 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVWS 145
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 41.5 bits (93), Expect = 8e-04
Identities = 34/133 (25%), Positives = 59/133 (44%)
Frame = -1
Query: 634 ILFSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCDSVSSHLEWCKDIKSFAGCNE 455
+++ +P+D TP CT + +F K +VIG+S D +SH E+ K K
Sbjct: 148 VVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHKEFKKKYK------- 200
Query: 454 DEPFPYPIIEDEKRELANKLGMIDNDELDHKGMPLTARAVFIVDPNKKFRLSILYPATTG 275
P+ ++ DE ++ + G+ D G L R +++D N +
Sbjct: 201 ---LPFTLLSDEGNKVRKEWGV----PADLFG-TLPGRQTYVLDKNGVVQYIYNNQFQPE 252
Query: 274 RNFDEILRILDSL 236
++ E L+IL SL
Sbjct: 253 KHIGETLKILQSL 265
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 36.3 bits (80), Expect = 0.029
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 373 LDHKGMPLTARAVFIVDPNKKFRLSILYPATTGRNFDEILRILDSLQ-LTDKAKVATPVD 197
+D G+ L R +FI+D + S + GR+ DE LR L +LQ + + P
Sbjct: 76 IDSVGIAL--RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAG 133
Query: 196 WKAGDDCM 173
WK G+ M
Sbjct: 134 WKPGEKSM 141
>01_03_0163 + 13346586-13347809
Length = 407
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 96 PDGSGTTLTPCGKHVLIWSSGTVGNTMQSSPAFQSTGVATLALSVNWRES 245
P GS + P G VL ++ GN MQ++PA A L +V W ++
Sbjct: 175 PGGSDAVVVPVGHGVLQYTGSGGGNQMQTTPAADGINCADLYGAVPWDDT 224
>06_01_0011 + 162301-163218,163349-163987
Length = 518
Score = 31.5 bits (68), Expect = 0.83
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = +3
Query: 90 FLPDGSGTTLTPCGKHVLIWSSGT-------VGNTMQSSPAF 194
FLPDG+G T+ P G+H + G+ +G MQ+ PAF
Sbjct: 425 FLPDGAGATVDPKGQHPQLMPFGSGRRACPGMGLAMQAVPAF 466
>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
Length = 266
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 377 VIVNHAELVGQLSLLVFNYRIRKWFVFIATSKRLNVLAPFQVRGY 511
V+V H EL L +F +R+ F A +KR NV RGY
Sbjct: 37 VVVAHGELGADLREALFGRAVREAFALPAEAKRRNVSTVGPYRGY 81
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 628 FSHPSDFTPVCTTELARVLVLLPEFVKRNTKVIGLSCD 515
F++ S +T V T LA+ LVL E R+ V+ SCD
Sbjct: 703 FTNTSPYTVVETMSLAKALVLFREVGLRHLLVVPKSCD 740
>12_02_0757 +
22845825-22846032,22848331-22848498,22848929-22849434,
22849890-22850151,22851708-22851942,22854240-22854496,
22854592-22854635
Length = 559
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 562 PEFVKRNTKVIGLSCDSVSSHLEWCKDIKSFAGCNEDEPFPY 437
P+F+ + L+CDSVSS C + AG N +P Y
Sbjct: 240 PDFINNGCYYVSLTCDSVSS--SNCGAAAAAAGANGAQPQRY 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,344
Number of Sequences: 37544
Number of extensions: 512765
Number of successful extensions: 1287
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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