Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d18
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.3  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   2.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   4.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.4  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 551 SGQKQAESNTSQFLRTLSQVESKLSEQINYLTQVSTGQPHEGSGYASQKVLQMA 390
           SG K A+   +QFL  +      L  + NY    S     + SG    + + +A
Sbjct: 417 SGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQSQNGNSQNSGNPVSQAIDLA 470


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 89  LNHW*WITSCQQYINNHIFR*NLFLIKLVFNNYYYYCFHSMCRL 220
           L++W W       +++ +    L    +V N +Y YC+HS+ +L
Sbjct: 159 LSNWSWTHRAMFILHSMVILMKLHSYNVV-NGWYSYCYHSLNKL 201


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
 Frame = +2

Query: 392 PFAKPSVKHIQ--NLHVVVQL---KLESSNLFVHSTLIPLD*VFLKTVMCLIQLVFDQIF 556
           P    ++KH +  NL + V+L   K+ S + F + +L  L  V+LKT   LI+L  DQI 
Sbjct: 218 PLILSTIKHAEENNLDLSVRLLPSKVLSDSEF-YKSLSNLVNVWLKTTRSLIKLFHDQIS 276

Query: 557 LYSIQE 574
             +++E
Sbjct: 277 KTALEE 282


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 188 YYYC-FHSMCRLLFNVHTFN*FNIRYWCQMMSYC 286
           Y +C FHSM ++  ++H        +WC++   C
Sbjct: 163 YIFCNFHSMYQIKLSIHATYDSENGFWCRVCREC 196


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 335  LSDDPIRSPMI*HVLNDAKPFAKPSVKHIQNLHVVVQLKLESSNLFVHSTLIPLD*VFLK 514
            L+DDP  SP   H +    P        +QNL +++   ++S   FVHS L   + ++LK
Sbjct: 935  LNDDPGLSPKWLHAIKKLLPLL------LQNLQLLMVNPIQSLCKFVHSFLDQHESMYLK 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,161
Number of Sequences: 5004
Number of extensions: 61690
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)