Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d17
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15313-6|AAA28198.1| 491|Caenorhabditis elegans Leucine aminope... 50 2e-06
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 31 0.88
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 4.7
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 28 6.2
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 28 6.2
U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-l... 28 8.2
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l... 28 8.2
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto... 28 8.2
>L15313-6|AAA28198.1| 491|Caenorhabditis elegans Leucine
aminopeptidase protein 1 protein.
Length = 491
Score = 49.6 bits (113), Expect = 2e-06
Identities = 47/151 (31%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Frame = -1
Query: 522 EIEDTDMEGRLMLADALVYGQAVHKPELVIDVATFTRGVLQALGGAACG-CYTESEALWR 346
EI +TD EGRL+LAD + Y + K + D+AT T G L G G T E L
Sbjct: 329 EINNTDAEGRLILADGVFYAKETLKATTIFDMATLT-GAQAWLSGRLHGAAMTNDEQLEN 387
Query: 345 DVTAAGARSGDR-AWRLPLWDYYRRQITDDPSVDLRNKGSGK---ATSCLGAAFLKSFV- 181
++ AG SGD A L D + + D++N GK S + F+ + +
Sbjct: 388 EIIKAGKASGDLVAPMLFAPDLFFGDLKSS-IADMKNSNLGKMDGPPSAVAGLFIGAHIG 446
Query: 180 ---CCSWLHVDTTG---VGKLAHGSAPPYLS 106
WLH+D VG G P S
Sbjct: 447 FGEGLRWLHLDIAAPAEVGDRGTGYGPALFS 477
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -1
Query: 582 DSA*RSETSSELSTDSPSRSEIEDTDMEGRLMLADALVYGQAVHKPELVIDVATFTRG 409
+S+ RSE+SSE SP R ++ + + DAL +A K +D A G
Sbjct: 483 ESSERSESSSESPNSSPQRENLDTAPPQEEELFDDALEDPEASPKSPETVDAAPIEEG 540
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 514 RHGHGGPADAGRRSGVRAGR 455
RHGHGG G RSG GR
Sbjct: 252 RHGHGGHGGHGSRSGSPGGR 271
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 514 RHGHGGPADAGRRSGVRAGR 455
RHGHGG G RSG GR
Sbjct: 301 RHGHGGHGGHGSRSGSPGGR 320
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 501 PCPCLRSRTWMESPLRALTTSPT--FMHCPLTMFSHIGMTAQTLI 629
P PC R ++ + R T S + F CPL + HIG T +
Sbjct: 849 PNPCFEGRPFVGADGRTQTCSASANFNTCPLNHWCHIGSDLSTTV 893
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 501 PCPCLRSRTWMESPLRALTTSPT--FMHCPLTMFSHIGMTAQTLI 629
P PC R ++ + R T S + F CPL + HIG T +
Sbjct: 1267 PNPCFEGRPFVGADGRTQTCSASANFNTCPLNHWCHIGSDLSTTV 1311
>U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-like
protein 1, isoformb protein.
Length = 937
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 471 PERRPASAGPPCPCLRSRTWMESPLRALTTSPTFMHCPLTMFSHIGMTAQTLIG 632
P +P S P RS W++SPL A SP + PL + + G QT +G
Sbjct: 520 PTPQPQSHDPMMAPSRS-WWLDSPLTASVQSPLSVATPLPLANQTG--PQTPLG 570
>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
protein 1, isoforma protein.
Length = 1009
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 471 PERRPASAGPPCPCLRSRTWMESPLRALTTSPTFMHCPLTMFSHIGMTAQTLIG 632
P +P S P RS W++SPL A SP + PL + + G QT +G
Sbjct: 520 PTPQPQSHDPMMAPSRS-WWLDSPLTASVQSPLSVATPLPLANQTG--PQTPLG 570
>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
protein.
Length = 1009
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 471 PERRPASAGPPCPCLRSRTWMESPLRALTTSPTFMHCPLTMFSHIGMTAQTLIG 632
P +P S P RS W++SPL A SP + PL + + G QT +G
Sbjct: 520 PTPQPQSHDPMMAPSRS-WWLDSPLTASVQSPLSVATPLPLANQTG--PQTPLG 570
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,258
Number of Sequences: 27780
Number of extensions: 196276
Number of successful extensions: 739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -