Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d16
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0767 - 21360999-21361157,21361185-21361274,21361413-213615...    29   4.9  
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274...    29   4.9  
03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762...    28   6.5  

>07_03_0767 -
           21360999-21361157,21361185-21361274,21361413-21361563,
           21361650-21361887,21361984-21362191,21362442-21362462,
           21363884-21364011,21364108-21364245,21364820-21365654
          Length = 655

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 249 FPTTSE--LLAKIKMKMPSGIRR*YFHLQQPSYKPVLQRSGLAEEAGPAKRLPTKLKRNT 422
           FP   E   +A  +  + S + +  F+  QP    VL+  GLA   GPA    T  K N+
Sbjct: 226 FPVNVEGARIAGTRCNLRSELNQGTFYTGQPMV--VLRADGLAPAQGPAPAATTGGKNNS 283

Query: 423 RSKV 434
            SKV
Sbjct: 284 ASKV 287


>05_01_0350 +
           2736096-2736242,2736460-2736508,2736704-2737046,
           2743911-2744499
          Length = 375

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = +2

Query: 266 ASSKNKNENAVRNKALIFPSTTAIV*TSAPAVGACRRSRPRKEAPNQVKKKYSLKGDRTF 445
           +SSK+    A++ KA    S+ A V  +     AC    P  EA  +     + KGDR  
Sbjct: 181 SSSKSSETKAIKMKA----SSLAAVAAAVLVAAACSGRAPVAEATIESTCGAAAKGDRRV 236

Query: 446 DAFHIRRQLINMTRVSEA 499
           D     RQ  +    +EA
Sbjct: 237 DVGFCARQFASYHGAAEA 254


>03_05_0492 -
           24874517-24874960,24875672-24875815,24876214-24876282,
           24876452-24876570,24878292-24878580
          Length = 354

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 379 ASSASPDRWSTGLYDGCC 326
           A+ A+P RW+T   DGCC
Sbjct: 332 AAVAAPFRWATAAGDGCC 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,595,490
Number of Sequences: 37544
Number of extensions: 416139
Number of successful extensions: 1174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)