Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d16
         (724 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB033019-1|BAA86507.2|  605|Homo sapiens KIAA1193 protein protein.     31   3.2  
BC067345-1|AAH67345.1|  263|Homo sapiens hypothetical protein LO...    30   9.6  
AF258593-1|AAG23796.1|  263|Homo sapiens PP905 protein.                30   9.6  

>AB033019-1|BAA86507.2|  605|Homo sapiens KIAA1193 protein protein.
          Length = 605

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 582 DLHYMLMSKEDKLYIDDIDVSRVLWCVEASDTLVI 478
           D+ + + S+ED L+  ++    VLWC+E SD  V+
Sbjct: 443 DVLWCIESEEDVLWCIEVSDEDVLWCIEVSDEDVL 477



 Score = 31.5 bits (68), Expect = 3.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 627 VKFEVVTFDREPLANDLHYMLMSKEDKLYIDDIDVSRVLWCVEASDTLVI 478
           V  E V +  E    D+ + + S ED L+  ++    VLWC+E SD  V+
Sbjct: 471 VSDEDVLWCIEESDEDVLWCIESDEDVLWCIEVSDENVLWCIEESDEDVL 520



 Score = 31.5 bits (68), Expect = 3.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 582 DLHYMLMSKEDKLYIDDIDVSRVLWCVEASDTLVI 478
           D+ + + S ED L+  ++    VLWC+E SD  V+
Sbjct: 550 DVLWCIESDEDVLWCIEVSDENVLWCIEVSDEGVL 584


>BC067345-1|AAH67345.1|  263|Homo sapiens hypothetical protein
           LOC201175 protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 177 PRIQTPEGSHPGPGAPNELALNARF 251
           P    P G HP P AP  LA + RF
Sbjct: 73  PAAAAPPGPHPSPAAPEPLAYDYRF 97


>AF258593-1|AAG23796.1|  263|Homo sapiens PP905 protein.
          Length = 263

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 177 PRIQTPEGSHPGPGAPNELALNARF 251
           P    P G HP P AP  LA + RF
Sbjct: 73  PAAAAPPGPHPSPAAPEPLAYDYRF 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,595,409
Number of Sequences: 237096
Number of extensions: 2452073
Number of successful extensions: 5800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5790
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)