Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d16
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.55 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -2

Query: 477 LISCLLIWNASNVRSPLSEYFF 412
           +I+C++IW   ++++P + Y F
Sbjct: 52  IITCIVIWRNPSMQTPTNYYLF 73


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 79  NKQLATFSMQTKSIYVISNFNALHVVVTPKGLNLVFRLLKAH 204
           NK+ +  S    S Y+++N    H + + KGLN++  +++ +
Sbjct: 329 NKE-SRISAAIDSGYILNNDGKWHNIYSEKGLNILGNIIEGN 369


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 79  NKQLATFSMQTKSIYVISNFNALHVVVTPKGLNLVFRLLKAH 204
           NK+ +  S    S Y+++N    H + + KGLN++  +++ +
Sbjct: 329 NKE-SRISAAIDSGYILNNDGKWHNIYSEKGLNILGNIIEGN 369


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 322 WKYQRLIPDGIFIFIF 275
           WKY  ++ D IF++IF
Sbjct: 539 WKYVAMVLDRIFLWIF 554


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 367 SPDRWSTGLYDGCCRWKYQRLIPDGIFIFIF 275
           SP R +T  YD CC+ +   +  D +  F F
Sbjct: 337 SPVRPATVQYDTCCQGRATAIYIDKVSRFFF 367


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 127  ISNFNALHVVVTPKGLNLVFRLLKAHTLVPAHPTSS 234
            I   + L V+ TP GL      + A  + P   TSS
Sbjct: 1250 IKTLHGLKVIPTPAGLKTTGAAVYARVIAPTTITSS 1285


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +1

Query: 121 YVISNFNALHVVVTPKGLNLVFRLLKAHT 207
           Y+I  +     + TP+GLN++  +++ ++
Sbjct: 344 YLIDEYGKKIDIYTPEGLNMLGNVIEGNS 372


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 192 PEGSHPGPGAPNELALNARFPTTSE 266
           P GS  GPGA    AL ++  + SE
Sbjct: 151 PTGSSCGPGAAAAAALLSKRRSVSE 175


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 379 QAPQRGSQPS 408
           QAPQRGS P+
Sbjct: 32  QAPQRGSPPN 41


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 216 RDQGVSLQESEYEVQTLWSNDDVQSVE 136
           RD G   ++S +EV +L   ++ +  E
Sbjct: 33  RDDGGKSRQSSFEVTSLLMREETEDAE 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,154
Number of Sequences: 438
Number of extensions: 4656
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)