Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d15
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...   130   3e-31
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    60   3e-10
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   3.0  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   4.0  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.3  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   7.0  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   9.3  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score =  130 bits (313), Expect = 3e-31
 Identities = 64/163 (39%), Positives = 96/163 (58%)
 Frame = -2

Query: 773 GNKFYHVLIPREKTSLLKEWDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIV 594
           G K  +VL P+    +L++WDLWGPL+   ++A  L  S ++ +  +     F  V  ++
Sbjct: 73  GEKLVYVLYPKN-AQVLRDWDLWGPLIFSLVIALALALSTDKIERES----VFTVVVALI 127

Query: 593 WIGAAVVTINSKLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVI 414
           W G AV ++N KLLG NIS FQS+C+LGY  FP+ +A I+C  +        L F+R+ +
Sbjct: 128 WFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCAFVP-------LIFIRIPV 180

Query: 413 SMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLV 285
            +  + W  FAA   L +S    KK LAVYP+ LFYF L+W++
Sbjct: 181 IVAMYAWTLFAAMGVLQNSNLSNKKLLAVYPLFLFYFSLAWII 223


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 4/166 (2%)
 Frame = -2

Query: 767 KFYHVLIPREKTS--LLKEWDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIV 594
           K  HVL P +     ++ + D+ GP+L C L +T L         S  G   F  ++ I 
Sbjct: 74  KTTHVLNPFKHVDVHIMDDTDMAGPILFCLLFSTFL---------SLHGRSHFGYIYGIA 124

Query: 593 WIGAAVVTINSKLLGG-NISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLV 417
            +G+  +    +L+   N+ F ++V VLGY L P+ +      I  F    TF       
Sbjct: 125 LLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLLPLVV------IAFFKNIFTFNGIAGYA 178

Query: 416 ISMIGFIWATFAATK-FLGDSQPEGKKALAVYPICLFYFILSWLVV 282
           ++ +  IW T+AA+  F+G  Q    + L  YPI LFY + + + V
Sbjct: 179 LAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAVITV 224


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 547 PPSSLELIVTTAA---PIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQR 693
           PP++   +V+  A   P+ +   TS N   P+L  S L A P   VAI   R
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSPALFDSELGARPEGSVAIEPSR 361


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 488 LALIICRIILFSAQNTFLFFLRLVISMIGF 399
           + L+IC+ +LF    T LF   +  SM+GF
Sbjct: 30  IKLLICKFLLFHDFGTALFTSLVKASMLGF 59


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 483 AHHLPHH-TVQCAEHLPILPEAS 418
           A ++PH+ + + ++HLP+LP+AS
Sbjct: 243 ATYIPHNPSKKSSQHLPLLPDAS 265


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 344 SLQVDCHQGILLPR 385
           ++++DC QG+L+PR
Sbjct: 82  NIKIDCQQGVLIPR 95


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 401 FIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVSH 276
           ++W TF + K +G  + E   A +  PI      ++W++  +
Sbjct: 155 YLWTTFLSLKGMGFEESEIFGAFSSIPIVSIDEYITWMITEN 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,820
Number of Sequences: 5004
Number of extensions: 63496
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)