Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d15
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 99 3e-21
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 95 4e-20
05_03_0316 + 12242823-12242964,12243032-12243282,12243370-122435... 31 1.0
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048 29 4.2
11_04_0122 + 13689847-13690704 29 5.5
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 28 9.7
07_01_0703 - 5295561-5297523,5299344-5299462 28 9.7
06_01_1202 + 10389090-10389140,10389218-10389853,10390355-103904... 28 9.7
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954... 28 9.7
03_06_0680 - 35497868-35497884,35498058-35501961 28 9.7
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 99.1 bits (236), Expect = 3e-21
Identities = 50/149 (33%), Positives = 84/149 (56%)
Frame = -2
Query: 725 LKEWDLWGPLLLCTLMATILQGSAERADNSNDGGPEFAEVFVIVWIGAAVVTINSKLLGG 546
L++WDLWGP + L SA S FA F ++ GA ++T+N LLGG
Sbjct: 134 LRDWDLWGPFFFIVFLGLTLSWSA-----SVKKSEVFAVAFAVLAAGAIILTLNVLLLGG 188
Query: 545 NISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFAATKFL 366
+I FFQS+ +LGYCLFP+ + ++C + N L++++ + W+++AA F+
Sbjct: 189 HIIFFQSLSLLGYCLFPLDVGALVCML----KDNV---ILKIIVVTVTLAWSSWAAYPFM 241
Query: 365 GDSQPEGKKALAVYPICLFYFILSWLVVS 279
+ +KALA+YP+ L Y + +L+++
Sbjct: 242 SAAVNPRRKALALYPVFLMYISVGFLIIA 270
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 95.5 bits (227), Expect = 4e-20
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 5/154 (3%)
Frame = -2
Query: 725 LKEWDLWGPLLLCTLMATILQGSAE-----RADNSNDGGPEFAEVFVIVWIGAAVVTINS 561
L++WDLWGP + L SA FA F ++ GA ++T+N
Sbjct: 141 LRDWDLWGPFFFIVFLGLTLSWSASVKKIIMFTRFLCKSEVFAVAFAVLAAGAIILTLNV 200
Query: 560 KLLGGNISFFQSVCVLGYCLFPVALALIICRIILFSAQNTFLFFLRLVISMIGFIWATFA 381
LLGG I+FFQS+ +LGYCLFP+ + +IC + N L + +V+++ W+++A
Sbjct: 201 LLLGGRINFFQSLSLLGYCLFPLDVGALICML----KDNVLLKIIAVVVTL---AWSSWA 253
Query: 380 ATKFLGDSQPEGKKALAVYPICLFYFILSWLVVS 279
A F+ + +KALA+YP+ L Y + +L+++
Sbjct: 254 AYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIA 287
>05_03_0316 +
12242823-12242964,12243032-12243282,12243370-12243573,
12243660-12243752,12243828-12243926,12244006-12244308
Length = 363
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 450 RTEQYDAADDEREGHREQTVAENAHRLEE*NVSTQQFRVDSYNCSPD 590
R+++ D G + Q + N H +EE N++ ++R + Y PD
Sbjct: 4 RSQRLQGLDFSENGVQNQEMVPNDHYVEEQNITNAEWRSNCYEYHPD 50
>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
Length = 853
Score = 29.1 bits (62), Expect = 4.2
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Frame = -2
Query: 527 SVCVLGYCLFPVALALIICRIILFSAQN--TFLFFLRLVI---SMIGFI---WATFAATK 372
SV +L Y LFPV + I R I + + T++ +L +VI MIG + WA
Sbjct: 625 SVFLLFYLLFPV---IWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLD 681
Query: 371 FLGDSQPEGKKALAVYPICLFYFIL 297
++ + Q A AVYP+ + + +L
Sbjct: 682 WIRNEQFYIIGATAVYPLAVLHIVL 706
>11_04_0122 + 13689847-13690704
Length = 285
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 562 ELIVTTAAPIQTITNTSANSGPPSLELSALSAEPWRIVAIRVQRSNGPHR 711
E++V ++ + +A++ SL+ LS PWR + + GP+R
Sbjct: 192 EVLVARPDDVRKVVRAAASAARRSLKRRRLSVPPWRKRKFMIAKWLGPYR 241
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 480 HHLPHHTVQCAEHLPILPE 424
+HLPHH C +L I PE
Sbjct: 495 NHLPHHLKACMMYLSIFPE 513
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 480 HHLPHHTVQCAEHLPILPEASHIHDRIHLGY 388
+HLPHH C +L + PE ++ D+ L Y
Sbjct: 191 NHLPHHLRACMMYLSLFPE-DYVVDKRRLLY 220
>06_01_1202 +
10389090-10389140,10389218-10389853,10390355-10390439,
10390536-10390654,10391251-10391318,10391401-10391710
Length = 422
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 758 HVLIPREKTSLLKEWDLWG-PLLLCTLMATILQGSAERADNSNDGGPE 618
HV+ +EKT + +EW ++G P T ++G R +++D G E
Sbjct: 262 HVVDLKEKTCICREWQVYGKPCAHALCFITSIRGVQCRWWDNSDSGLE 309
>04_03_0103 +
11288977-11290353,11291962-11292075,11294987-11295436,
11295813-11295910,11296023-11296206,11296979-11297068,
11301608-11301727,11301812-11302054,11302715-11302988,
11303237-11303357,11303591-11303849
Length = 1109
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 474 LPHHTVQCAEHLPILPEASHIHDRIHLGYFRGNKI 370
L H V C E PI+P S D + +F N I
Sbjct: 695 LGFHHVPCQEDFPIMPTVSSSFDLKPVNFFESNPI 729
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 430 KNRKVFCALNSMMRQMMSARATGNKQ*PRTHTDW-KNEMFPPSSLELIVTTAAPIQTITN 606
K+ K+ C ++ +M + A+++ K+ T K+E FP S+ L ++ + I N
Sbjct: 490 KDSKITCKIHDLMHDV--AQSSMGKECAAIATKLSKSEDFPSSARHLFLS-GYRAEAILN 546
Query: 607 TSANSGPPSLELSALSAE 660
TS G P ++ S++
Sbjct: 547 TSLEKGHPGIQTLICSSQ 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,054,708
Number of Sequences: 37544
Number of extensions: 414251
Number of successful extensions: 1071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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