Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d15
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   4.3  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   4.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 480 HHLPHHTVQCAEHLPILPEASHIHDRIHLGYFRG 379
           +HL +H V  A H  IL  +  + +R    YF G
Sbjct: 274 YHLDNHHVHHANHHAILGHSGFLCERHQKRYFFG 307


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 599 IVWIGAAVVTINSKLLGGN 543
           +VW+GAA +++   L+ GN
Sbjct: 164 LVWLGAACISLPPLLIMGN 182


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 595 FGSGLQL*LSTLNCWVETFHS 533
           F  G+ +  + LNCW +T +S
Sbjct: 228 FQGGISISGTALNCWTQTENS 248


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 595 FGSGLQL*LSTLNCWVETFHS 533
           F  G+ +  + LNCW +T +S
Sbjct: 99  FQGGISISGTALNCWTQTENS 119


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 37  HRNVLLCLKFQGFFFKSVQK 96
           H N L C   +GFF +S+ K
Sbjct: 198 HYNALTCEGCKGFFRRSITK 217



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 732 QSFKRMGPVGAVTPLHSYGHYPP 664
           +S    G  G +TP+  YG+  P
Sbjct: 308 ESLSTSGSSGILTPVSPYGYVKP 330


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 595 FGSGLQL*LSTLNCWVETFHS 533
           F  G+ +  + LNCW +T +S
Sbjct: 228 FQGGISISGTALNCWTQTENS 248


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 492 GPRAHHLPHHTVQCAEHL 439
           GP  HH  HH  Q  +HL
Sbjct: 348 GPPHHH-HHHQTQSLQHL 364


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 37  HRNVLLCLKFQGFFFKSVQKK 99
           H  V  C   +GFF +S+Q+K
Sbjct: 78  HYGVHSCEGCKGFFRRSIQQK 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,356
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)