Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d11
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   3.1  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   4.1  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   4.1  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   7.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.1  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  DDLLLLGDASRCLGLETWKSVAD 98
           D+ LLL DA   LGL  W  +AD
Sbjct: 69  DEELLLIDACETLGLGNWADIAD 91


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 95 SNRFPSLQPQASTSIPKQQEIVAANSSPRN 6
          S   PS+QP  ++SIP +Q      S+P N
Sbjct: 3  SYALPSMQPTPTSSIPLRQMSQPTTSAPSN 32


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
          Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 73 SPKHRLASPSSKRSSRRTALQEI 5
          S  H+   P S RSSRRT+ +E+
Sbjct: 28 SASHKKRGPVSDRSSRRTSSEEV 50


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 491 MGKVPYLSDSEATDDTCSSYENGSRKKK 408
           +G VP LSDS AT D   S+E+    +K
Sbjct: 270 LGSVPSLSDSIATVDPFFSFESFETDEK 297


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 178 VSSVECPDRLGR-SPVVAEASXSLSRGTSATDFQVSSPKHRLASPSSKRS 32
           +++   PD + R SP+V+      S  +S+   Q+ + KH+L+SP   R+
Sbjct: 107 ITATGVPDGILRDSPIVSALEPPSSNSSSSP--QLQNLKHQLSSPQPSRA 154


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 142 SPVVAEASXSLSRGTSATDFQVSSPKHRLASPSSK 38
           S VV+ AS +LS   S+    VSS     ASP+ K
Sbjct: 264 SSVVSSASSALSASASSASASVSSSASSDASPALK 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,529
Number of Sequences: 5004
Number of extensions: 37726
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)