Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d11
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-6|CAA82573.2|  280|Caenorhabditis elegans Hypothetical pr...    31   0.53 
L26545-2|AAA20080.1|  280|Caenorhabditis elegans CED-9 protein.        31   0.53 
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    29   2.8  

>Z29443-6|CAA82573.2|  280|Caenorhabditis elegans Hypothetical
           protein T07C4.8 protein.
          Length = 280

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 106 RGTSATDFQVSSPKHRLASPSSKRSSRRTALQE 8
           +GT  TDF ++S    L SPS + S+RR ++ E
Sbjct: 32  KGTEPTDFGINSDAQDLPSPSRQASTRRMSIGE 64


>L26545-2|AAA20080.1|  280|Caenorhabditis elegans CED-9 protein.
          Length = 280

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 106 RGTSATDFQVSSPKHRLASPSSKRSSRRTALQE 8
           +GT  TDF ++S    L SPS + S+RR ++ E
Sbjct: 32  KGTEPTDFGINSDAQDLPSPSRQASTRRMSIGE 64


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 199 DPSLKIDVSSVECPDRLGRSPVVAEASXSLSR-GTSATDFQVSSPKHRLASPSSKRSSRR 23
           +PS   D SS E P+    S   +E S S    G S++DF  S+P   ++S     SS  
Sbjct: 543 EPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNS 602

Query: 22  TALQ 11
            + +
Sbjct: 603 VSTE 606


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 199 DPSLKIDVSSVECPDRLGRSPVVAEASXSLSR-GTSATDFQVSSPKHRLASPSSKRSSRR 23
           +PS   D SS E P+    S   +E S S    G S++DF  S+P   ++S     SS  
Sbjct: 543 EPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNS 602

Query: 22  TALQ 11
            + +
Sbjct: 603 VSTE 606


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 199 DPSLKIDVSSVECPDRLGRSPVVAEASXSLSR-GTSATDFQVSSPKHRLASPSSKRSSRR 23
           +PS   D SS E P+    S   +E S S    G S++DF  S+P   ++S     SS  
Sbjct: 543 EPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNS 602

Query: 22  TALQ 11
            + +
Sbjct: 603 VSTE 606


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 199 DPSLKIDVSSVECPDRLGRSPVVAEASXSLSR-GTSATDFQVSSPKHRLASPSSKRSSRR 23
           +PS   D SS E P+    S   +E S S    G S++DF  S+P   ++S     SS  
Sbjct: 543 EPSGSSDSSSSELPNSSTDSGSTSEPSMSSEAPGASSSDFPSSTPDSSVSSEEPNASSNS 602

Query: 22  TALQ 11
            + +
Sbjct: 603 VSTE 606


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,287,986
Number of Sequences: 27780
Number of extensions: 213852
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)