Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d11
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 199  DPSLKIDVSSVECPDRL--GRSPVVAEASXSLSRGTSATDFQVSSPKHRLASPSSKRSSR 26
            DP  ++  S  E  ++L  G+   +   S  +  GTS+T   +S    + + P   RSSR
Sbjct: 1788 DPD-QLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSR 1846


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 199  DPSLKIDVSSVECPDRL--GRSPVVAEASXSLSRGTSATDFQVSSPKHRLASPSSKRSSR 26
            DP  ++  S  E  ++L  G+   +   S  +  GTS+T   +S    + + P   RSSR
Sbjct: 1784 DPD-QLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSR 1842


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 132 TTGLRPSRSGHSTDETS 182
           TTGL  SRS  S D T+
Sbjct: 353 TTGLERSRSWSSLDNTN 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,471
Number of Sequences: 438
Number of extensions: 2727
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)