Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d06
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   3.2  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.6  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   5.6  

>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 712 VDCCXWHIYVCMLCGD 759
           V C  W IY+C+LC D
Sbjct: 213 VVCFLWSIYICLLCLD 228


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 316 VVYNFFFISNVLFILF*YLQMNTISNIK-SVFVTFINTYI 200
           V+Y F+FIS ++F  + +     I N+K     +F  TYI
Sbjct: 487 VIYRFYFISALIFTSYSFWIPQIIQNVKQGTSRSFTWTYI 526


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 213 INVTNTLFIFDIVFICKYQNSIKSTLEIKKKLYTTQSNI 329
           I++ N L   +   + KYQ  +KS  EI  +LYT +  +
Sbjct: 478 IDILNNLIEKEEGELTKYQTLVKSKTEILTQLYTRKKQL 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,110
Number of Sequences: 5004
Number of extensions: 59957
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)