Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d06
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.4  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   4.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   5.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.8  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 NNFIHSP*SFHYTYTYNHLQIIYN*NTVIEMYVLINV 221
           N  IH+  ++ Y Y  N  ++ YN N + ++ + + V
Sbjct: 87  NKTIHNNNNYKYNYNNNCKKLYYNINYIEQIPIPVPV 123


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 102 LFSFX*IFYIVIALCRALERDM 37
           LFSF  I  I+ + C A+  DM
Sbjct: 16  LFSFVVILLIIPSKCEAVSNDM 37


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +1

Query: 145 THIHIIIYKLFTIK 186
           T+++++I K+FTIK
Sbjct: 288 TYVNLVIVKVFTIK 301


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 712 VDCCXWHIYVCMLCGDC 762
           V C     Y C +CG C
Sbjct: 65  VSCPVLRAYTCPICGAC 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 513 ITKFIENHGSLRYQLVSVLEI 575
           I+  IEN GS+R++L   L +
Sbjct: 195 ISDGIENIGSIRWELAGTLAV 215


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 513 ITKFIENHGSLRYQLVSVLEI 575
           I+  IEN GS+R++L   L +
Sbjct: 248 ISDGIENIGSIRWELAGTLAV 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,623
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)