Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d05
         (199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   4.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   4.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   5.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               18   9.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +1

Query: 10  STTPAXDMXSEFNISSCSTCKW*CTESRGRSMGRSKNRRVLHTYS 144
           S  P   +   FN++   T K  C +     + +  ++ +  TYS
Sbjct: 435 SCLPEEILCPHFNVTDGETTKTFCCKGYCMDLLKELSKTINFTYS 479


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 4   WSSTTPAXDMXSEFNISSCS 63
           WS  T   D+   F++ SC+
Sbjct: 107 WSFGTIMCDLWVSFDVLSCT 126


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 28  DMXSEFNISSCSTCK 72
           D   EF  S CS C+
Sbjct: 264 DEFDEFGDSKCSLCQ 278


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 193 VKTLILLNISLCFDLY 146
           +KT+++L  +LC   Y
Sbjct: 1   MKTIVILLFTLCIVSY 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,082
Number of Sequences: 438
Number of extensions: 255
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)