Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d04
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 30 0.38
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 29 0.88
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.5
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 2.7
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 27 2.7
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 27 4.7
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 26 6.2
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 26 6.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 6.2
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.2
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 26 8.2
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 8.2
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 213 QRKHVVYTFTSVQNQR*ISSKAINVRSPPSS 305
QRK+ +++++ N +S++A +V SPPSS
Sbjct: 335 QRKYSASSYSAIPNAMSVSNQAFDVESPPSS 365
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 29.1 bits (62), Expect = 0.88
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 259 ARLAPKQSMSEALQVLSGTFLSPL--KCDRGLKSSKCVNIFNIVPECVNRNEALGPPFEL 432
A++ PKQ+M+ ++S + L+P+ K D SS + +C + E PP +L
Sbjct: 222 AQIYPKQNMTNLEDIMSLSLLTPVSSKTDENANSSSAFLFHVLASDCFSSIENCIPP-DL 280
Query: 433 KFSNIFLMETQ 465
+F Q
Sbjct: 281 IIDKVFSSSLQ 291
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 380 ILKILTHLELFKPRSHLR-GDKNVPDRTW 297
I+ +LTHL+LFK S LR K + R W
Sbjct: 171 IMGVLTHLDLFKKTSTLREAKKRLKHRFW 199
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 773 KWQKQVKKNPLT-YTEQKLYGISKEMNDTIKSVT 675
K Q+ KKN + TEQK+ G+ +E+ I S+T
Sbjct: 382 KIQETEKKNAMIEMTEQKIAGMREELESQISSIT 415
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 620 KACGFETSWNKHFTSPWCYPFDVRSVQTMEYY 525
KA GF T WN F YP ++ +V + +Y
Sbjct: 121 KALGFATGWNYFFKYAIVYPTNLTAVGIVIHY 152
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 188 PMCEKELCPLKTLKEYFHKSIYECDYTDMCSLKKDDL*TVTKRKML*KKQRNCLIK 21
P K +CP TL F+KS C + C + DL + K+L + + C +K
Sbjct: 185 PNILKVICPCVTLTSVFNKSAGFCLVQEYC--PQGDLFKQIEEKVLTLEDKCCYLK 238
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 616 ALYIKFTSSKLSKFFRPSLF 675
A+ +KF S++ KF RPSLF
Sbjct: 245 AIPLKFLSARCLKFVRPSLF 264
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 353 LFKPRSHLRGDKNVPDRTWRASDIDCFGANLALVLYRCKGV 231
+ P HL PD AS++ G +LA + +C+G+
Sbjct: 364 IIHPCLHLNASLTHPDSKSEASEVVFVGPSLAHLSLQCRGI 404
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 489 SRFDLPPGLRLHQEYV 442
SRF+LPPGL + Q+++
Sbjct: 1936 SRFELPPGLVIDQKFI 1951
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 233 VDYVLALHQERVVKLPMCEKELCPLKTLKEYFHKSIYECDYTD 105
+D++++ R ++LP E+ LC K Y ++ Y D
Sbjct: 206 IDFMVSSVDPREIQLPGIEEALCITKAAVSYVSGIVFYTTYAD 248
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 770 WQKQVKKNPLTYTEQKLYGISKEMNDTI 687
W V K P+ T KLY +++ N TI
Sbjct: 263 WPDFVFKKPIVKTSLKLYSLAQRNNHTI 290
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -1
Query: 695 DTIKSVTKRL-GLKNLLSLDDVNLMY--KACGF-ETSWNKHFTSPWCYPFDVRSVQTMEY 528
DT +T L + + + +D N++ K CG E+ + + PW +D R
Sbjct: 102 DTCPIITADLLAITDEIVRNDANVIEQCKICGVPESGLSNVYCDPWTIGYDERYGSGRRL 161
Query: 527 YQDLKYYWMDGYGH 486
Q L YY GH
Sbjct: 162 QQALMYYKPGDSGH 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,666,020
Number of Sequences: 5004
Number of extensions: 78648
Number of successful extensions: 211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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