Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d04
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224... 62 4e-10
02_05_0861 - 32302896-32303117,32303224-32303346,32303478-323036... 31 0.93
08_02_1587 + 28062150-28062294,28062448-28062545,28062843-280629... 30 2.8
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 30 2.8
03_03_0227 - 15596445-15596522,15596635-15596767,15596861-155969... 29 6.5
06_01_0165 + 1288107-1290476 28 8.6
03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577... 28 8.6
>03_06_0463 + 34121421-34121560,34121728-34121812,34122129-34122428,
34123194-34123352,34123852-34123992,34124078-34124134,
34124534-34124672,34124954-34125058,34125159-34125376,
34125980-34126021,34126136-34126309
Length = 519
Score = 62.5 bits (145), Expect = 4e-10
Identities = 68/291 (23%), Positives = 118/291 (40%), Gaps = 37/291 (12%)
Frame = -1
Query: 851 KKEAQDVLFSPAAKVDTVLRFYKHCDKWQKQVKKNPLTYTEQKLYGISKEMNDTIKSVTK 672
K A VL A D LRF+ C+ ++ Y ++K + K+ ++ VT
Sbjct: 201 KNRAFSVLSESRAS-DICLRFFDSCETYKD--------YRKRKEPDVEKQKEPILEHVTS 251
Query: 671 RLGLKNLLSLD--DVNLMYKACGFETSWNKHFTSPWCYPFDVRSVQTMEYYQDLKYYWMD 498
L + L+ DV+ ++ C E S + T+ C F+ V +E+ DL+ + +
Sbjct: 252 ALVNRYHLNFTPKDVSSLWFLCKQEASL-MNITNQACQLFNEAEVYFLEWTDDLEGFVLK 310
Query: 497 GYGHDLTYRQACVSIKNMFENFSS------KGGPSASF-----LFTHSGTILKILTHLEL 351
GYG + YR +K++ ++ + P ++ F H+ T++ L L
Sbjct: 311 GYGESINYRMGLPLLKDVVQSMEEAIVAKEENHPDGTYEKARLRFAHAETVVPFSCLLGL 370
Query: 350 FKPRSHL-----RGDKNVPD-----RTWRASDIDCFGANLALVLYRCKGVD--------- 228
F S ++P R W+ S + F N L LY+C G
Sbjct: 371 FLEGSDFAKIQREESLDIPPVPPQGRNWKGSVVAPFAGNNMLALYQCPGKTDGGKISRDQ 430
Query: 227 ----YVLALHQERVVKLPMC-EKELCPLKTLKEYFHKSIYECDYTDMCSLK 90
+V +H E V +P C K+ CP + KE + + DY +C ++
Sbjct: 431 KSSYFVQVIHNEAPVSMPGCGNKDFCPFEEFKEKIVEPHLKHDYDALCKIR 481
>02_05_0861 -
32302896-32303117,32303224-32303346,32303478-32303666,
32303755-32304108
Length = 295
Score = 31.5 bits (68), Expect = 0.93
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -1
Query: 875 YFANGLXDKKEAQDVLFSPAAKVDTVLRFYKHCDKWQKQVKKNPLTYTEQKLYGISKEMN 696
Y A+ D+ +A VL A+ T++R + D + ++K+P Y E G+
Sbjct: 66 YMASDPGDRSKAAGVLQQAASLRATLVRTWAFSDGGYRPLQKSPGVYNEDMFMGL----- 120
Query: 695 DTIKSVTKRLGLKNLLSL 642
D + + K+ GL +LSL
Sbjct: 121 DFVIAEAKKRGLYLILSL 138
>08_02_1587 +
28062150-28062294,28062448-28062545,28062843-28062950,
28063095-28063344,28063485-28063528,28064181-28064248,
28064687-28064792,28064877-28065082,28065321-28065441,
28066302-28066354,28066477-28066615,28067056-28067124
Length = 468
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 611 GFETSWNKHFTSPWCYPFDVRSVQT-MEYYQDLKYYWMDGYGHDLTYRQACVSIK 450
G + N +C + Q ++ Y++LK+YW+ G GH + C ++K
Sbjct: 403 GLKNFTNSRRVPLYCSGGEAAGTQAFLKSYKNLKFYWILGAGHMVPIDNPCPALK 457
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = -1
Query: 851 KKEAQDVLFSPAAKVDTVLRFYKHCDKWQKQVKKNPLTYTEQKLYGISKEMNDTIKSVTK 672
KKEA +P K V +K C+ W K + P E + G+ ++N ++ K
Sbjct: 698 KKEAD----TPITKF-AVAPMFKTCESWIKLLDDLPTKDLEDAIKGLVADINHSVPRQEK 752
Query: 671 RLGLKNLLS 645
R G L S
Sbjct: 753 RRGTSKLTS 761
>03_03_0227 -
15596445-15596522,15596635-15596767,15596861-15596913,
15597825-15597875,15597999-15598068,15598402-15598586,
15598727-15598780,15599060-15599581
Length = 381
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 527 YQDLKYYWMDGYGHDLTYRQACVSI 453
Y++L +YW+ G GH + Q C+++
Sbjct: 342 YKNLHFYWILGAGHFVPVDQPCIAL 366
>06_01_0165 + 1288107-1290476
Length = 789
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 580 VKCLFHDVSKPQALY 624
VKCLFH +S P ALY
Sbjct: 424 VKCLFHYISTPPALY 438
>03_03_0233 -
15656930-15656998,15657459-15657591,15657677-15657729,
15658640-15658690,15658790-15658859,15659009-15659223,
15660465-15660570,15660686-15660753,15660861-15661148,
15661253-15661408,15661450-15661544,15661632-15661788
Length = 486
Score = 28.3 bits (60), Expect = 8.6
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 527 YQDLKYYWMDGYGHDLTYRQACVSI 453
Y++L +YW+ G GH + Q C+++
Sbjct: 450 YKNLHFYWILGAGHFVPADQPCIAL 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,163,186
Number of Sequences: 37544
Number of extensions: 480245
Number of successful extensions: 1142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -