Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d03
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.7  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   3.5  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   4.7  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   4.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   4.7  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   6.1  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.1  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    26   6.1  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 604 FFNGNGLPAVSVSVQLVPQRAPVRPQAPVHVLAELRMRGAPEQSHL 741
           FFNGN  P VSV    +P+  P        +L +L     P Q H+
Sbjct: 104 FFNGNHAPEVSVEAAFLPEGNPDAKTNWTPILPKLPC--GPTQRHI 147


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 431 SCTDSGGLLRTGTSAS*SPPWEGNKPPTSLS 339
           SCT S  +  TG S+S S P     PPTS S
Sbjct: 114 SCTTSTSIPPTGGSSSLSTPITPTVPPTSTS 144



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 431 SCTDSGGLLRTGTSAS*SPPWEGNKPPTSLS 339
           SCT S  +  TG S+S S P     PPTS S
Sbjct: 171 SCTTSTSIPPTGGSSSLSTPITPTVPPTSTS 201


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 160 PHSLYVSRSQSSCECSQWYCTDVVQIRSVIRER 258
           P++LY S+ Q++C+  Q YC D+ +IR +  +R
Sbjct: 42  PNALYHSQLQAACQKFQDYC-DLEEIRIIEAKR 73


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 737 CDCSGAPRMRSSASTCTGACGRTGARCGTSCTDTLT 630
           CD SG+  +  SAS+ TG C    +  G+S T+ ++
Sbjct: 439 CDFSGSATL-VSASSATGTCASYLSAAGSSATNAIS 473


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 182 AASLPVSVLSGIAQMLFKSEVLSENAQRM 268
           ++S+P  VLS + Q  F+SE+LS+    +
Sbjct: 237 SSSVPQDVLSQLRQFFFRSELLSDKLSNL 265


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 363 KQAANKPVTVDALKRAFALLDPAIDHIRMERYIRW 259
           K  + +P+ +D  K +  ++ P+++   +ERY  W
Sbjct: 698 KMESIRPINLDDFKTSIKVIRPSVNLQGLERYSEW 732


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 647 SWSRSARQCVRRPQYTCSLSCACA 718
           +W   + QCVRR ++ C+L  A A
Sbjct: 624 NWQNVSLQCVRRNKFMCALKNAIA 647


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 453 ERIELAKELYRQRRLAQDRYIRELVATLGGKQAANK 346
           E+ E+A++L RQRR+ Q+R   E+   L  K AA +
Sbjct: 834 EQREMAEKLERQRRIQQER-DEEISRKLAEKAAARR 868


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 615 SIEEFEKVAKATFPLKSEVD 556
           +++EFE+  +ATFPLK+  D
Sbjct: 309 NLQEFEEKFQATFPLKAPYD 328


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
 Frame = -1

Query: 495 ICLDKLFYENEEGFERIELAKELYRQRRLAQDRYIRELVATLGGKQAANKPVTVDALKRA 316
           +CL K+  + + G ER E+ K + R+ R    +Y  + VA +           V A K  
Sbjct: 320 VCLSKIT-KTKNGRERREIYKNI-RELRKDYRKYEAKTVANI-----------VSASKVV 366

Query: 315 FALLDPAIDH-IRMERYIRWAFSDNTSDLNNICAIPLRTLTGRLAAGDIERVGPRYKSIR 139
           F  L  A    ++ +R+      + +  L   C IPL  +   + AGD  ++ P  +S R
Sbjct: 367 FCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMNKVILAGDHMQLSPNVQSKR 426


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -1

Query: 780 NLCAGAEQLLDDPQVRLFWG-TAHAQLSEHVY--W--GLRTHWRAL 658
           NLC GA QLL D  + +     +  Q +EHV   W   +  HW+ L
Sbjct: 9   NLCLGALQLLADQPISVISNEPSEEQRNEHVLKKWENNVLRHWKIL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,545,246
Number of Sequences: 5004
Number of extensions: 73024
Number of successful extensions: 223
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)