Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d03
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910... 31 0.92
05_05_0335 - 24164714-24165574 31 1.6
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 31 1.6
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 31 1.6
08_01_0432 + 3782594-3783027,3783678-3783759,3784067-3784117,378... 30 2.1
07_01_0516 - 3850252-3852870 30 2.1
04_03_0799 - 19805190-19805749,19806316-19806403 30 2.1
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 30 2.1
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 30 2.8
03_06_0678 - 35480711-35484658 30 2.8
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612 29 3.7
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 29 4.9
06_01_0402 - 2882898-2883057,2883393-2883557,2883662-2883906 29 4.9
03_05_0797 - 27789692-27789715,27790304-27790417,27791020-277911... 29 4.9
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 29 6.5
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 29 6.5
09_04_0176 + 15361766-15362836 28 8.6
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 28 8.6
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 8.6
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 8.6
>03_02_0522 +
9103357-9103437,9103538-9103592,9103687-9103739,
9103832-9104060,9104149-9104284,9104448-9104496,
9105123-9105248,9106003-9106110,9106255-9106395
Length = 325
Score = 31.5 bits (68), Expect = 0.92
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 217 CTDVVQIRSVIRERPAYVTFHANMIDSWVEQ 309
C + V + ++R P FHAN ID W+ Q
Sbjct: 225 CLEQVVVGDLLRSLPCLHQFHANCIDPWLRQ 255
>05_05_0335 - 24164714-24165574
Length = 286
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 133 SPPNALIPRPHSLYVSRSQSSCECSQWYCTDVVQIRSVIRERPAYVTFHANMIDSWVEQC 312
+PP+A+ P + +SR E C D Q+ + RE P +HA+ I W+
Sbjct: 151 APPSAIDAMP-VVTISRRHLRAEPRCPVCQDEFQLGAEAREMPCAHLYHADCIVPWLVHH 209
Query: 313 EGPFQCVHS 339
C HS
Sbjct: 210 NSCPVCRHS 218
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = -1
Query: 651 QLYRHADGRETISIEEFEKVAKATFPLKSEVDIKNLVDVVRKQLK-----LKINNQLICL 487
Q+ DGR T+S E F K+ A + + ++NL D + L + L CL
Sbjct: 147 QMAIQVDGRRTVSPEAFAKIIPACPAMAHAITVRNLFDALTNSTGGRLHFLIYHKYLKCL 206
Query: 486 DKL 478
DK+
Sbjct: 207 DKV 209
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -1
Query: 567 SEVDIKNLVDVVRKQLKLKINNQLICLDKLFYENEEGFERIELAKELYRQR 415
+E+ ++L++ RK + IN + +CL + Y +GF + ++ + R
Sbjct: 472 NELHARSLIETYRKPVCWDINKRKLCLSRFTYNERQGFSSKKRERQGFSSR 522
>08_01_0432 +
3782594-3783027,3783678-3783759,3784067-3784117,
3784279-3784514,3785008-3785058,3790905-3791106,
3791695-3791977,3792617-3792687
Length = 469
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 311 AKALFSASTVTGLLAACFPP 370
AK F + T +GL+AACFPP
Sbjct: 343 AKERFCSDTYSGLVAACFPP 362
>07_01_0516 - 3850252-3852870
Length = 872
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +1
Query: 145 ALIPRPHSLYVSRSQSSCECSQWYCTDVVQIR---SVIRERPAYV-TFHANMIDSW 300
AL P+ S YV S E ++W C++ +++ +R+ PA TFH N I S+
Sbjct: 699 ALEPQDPSTYVLASNLYSESARWQCSESTRLKMREKGMRKIPARSWTFHGNSIHSF 754
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -2
Query: 764 PSSC*TTRRCDCSGAPRMRSSASTCTGACG-RTGARCGTSC 645
P C T C G + + S C G C G CG SC
Sbjct: 134 PKPCECTHHCGGHGGGCNKPAVSPCGGGCSISDGGACGASC 174
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 800 SEPNGRTTCALAPSSC*TTR-RCDCSGAPRMRSSASTCTGACGRTGARCGTSCTDTLTAG 624
+ P G T A AP+ C T+ RC + A S + A R GT T AG
Sbjct: 66 TSPPGAPTAATAPARCTTSSARCTAAAAASGPGGGSARSAAAAAPTGRPGTVAAGTRRAG 125
Query: 623 R 621
+
Sbjct: 126 K 126
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 380 SPPWEGNKPPTSLSLWTH--*KGPSHCSTQ 297
+PPW PP+ + W H +GP+H TQ
Sbjct: 318 APPWVPPPPPSDPAFWHHPYMRGPAHVPTQ 347
>03_06_0678 - 35480711-35484658
Length = 1315
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = -1
Query: 768 GAEQLLDDPQVRLFWGTAHAQLSEHVYWGLRTHWRALRDQLYRHADGRETISIEEFEKVA 589
GA++L D + G + + + V+ + W AL+ L G ++ + VA
Sbjct: 262 GAKKLPQDELKEVVSGQRYLLILDDVWNRDASKWEALKYNLKHGGSGSSVLTTTRDQAVA 321
Query: 588 KATFPLKSEVDIKNL 544
+ P + D+KNL
Sbjct: 322 QLMAPAQEVYDLKNL 336
>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
Length = 648
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 652 VPQRAPVRPQAPVHVLAELRMRGAPEQSHLRVV*QL--LGASAQVVRPFGS 798
VP+R P++ QA V L ELR A QS + + + +G ++ PF S
Sbjct: 162 VPKRQPLKGQARVAALRELRSLAAAHQSVTKAIAEAGGVGLLTSLLGPFTS 212
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 29.1 bits (62), Expect = 4.9
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
Frame = -1
Query: 678 RTHWRALRDQLYRHADGRETISIEEF--EKVAKATFPLKSEVDIKNLVDVVRKQLKLKIN 505
R W++ +D +HA G ++ F +K + P K V+ + K +
Sbjct: 289 RERWKSAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLT 348
Query: 504 NQLICLDKLFYENEEGFERIELAKELYRQRRLAQDRYIRELVATLGGKQAANKPVTVDAL 325
+ + L++ E EGF +E+ ++ + R A + ++ G+ K +
Sbjct: 349 DMMRSLEEN-PEKGEGFN-VEIGEKKKTKGRHAHTQ--SQIFKYAYGQIEKEKAMEQQNK 404
Query: 324 KRAFA-LLDPAIDH-IRMERYIRWAFSDNTSDLNNICAIPLRTLTGRLAAGDIERV-GP 157
F+ ++ A D IR I AF D T L LR++TG+L G + V GP
Sbjct: 405 NLTFSGVISMATDEDIRTRPRIEIAFKDLTLTLKGSKKKLLRSVTGKLMPGRVAAVMGP 463
>06_01_0402 - 2882898-2883057,2883393-2883557,2883662-2883906
Length = 189
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 734 DCSGAP-RMRSSASTCTGACGRTGARCGTSCTDTLTAGRPFP 612
DC+G P R SA AC A CG D + + FP
Sbjct: 88 DCAGLPERTNESAGAYARACVEVAAECGLRVIDIWSKMQRFP 129
>03_05_0797 -
27789692-27789715,27790304-27790417,27791020-27791199,
27791285-27791376,27791797-27791908,27791990-27792208,
27792556-27792592,27793719-27793819,27793963-27794058,
27794312-27794437,27794555-27794869
Length = 471
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -1
Query: 501 QLICLDKLFYENEEGFERIELAKELYRQRRLAQDRYIRELVATLG-GKQAANKPVTVDAL 325
QLI LD Y+ + RI A L++ A ++ I+E LG G+ V +
Sbjct: 341 QLILLDHGLYKELDYATRISYAS-LWKALVFADEKSIKENSVKLGAGEDLHALFAGVLTM 399
Query: 324 KRAFALLDPAIDHIRME 274
+ +++DPA+DH+ ++
Sbjct: 400 RPWKSVIDPAVDHLVLD 416
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 560 TSLFNGNVAFATFSNSSMEMVSRPSACRYSWSRSARQCVRRPQ 688
TS A + S ++M + +RPS+ YSW + R+ P+
Sbjct: 3 TSATTTTTATSATSTTAMRITTRPSSSAYSWLTTKRKNSAEPE 45
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 399 RYIRELVATL-GGKQAANKPVTVDALKRAFALLDPAIDHIRMERYIRWAFSD 247
R + L A+L G + ++ VDAL R ALL ++ I ++ AFSD
Sbjct: 44 RAVASLAASLVAGARPPSQRRNVDALARRLALLSAILESILLDTAAAGAFSD 95
>09_04_0176 + 15361766-15362836
Length = 356
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 738 PAGRLAAARRQRTGCTPIRLGPKPA 812
P G+ AA +RQ+ C P LG KP+
Sbjct: 326 PEGQKAAKQRQKGKCEPSPLGDKPS 350
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 879 GNNNTCPMSMQDYVTKYFEDRYQQASVRAEWAYNLCAGAEQLLDDPQVRL 730
GN C + + K+F Y+QAS W Y G E P +RL
Sbjct: 103 GNGTNCARIVPNSAVKFFS--YEQASSGILWLYRQQTGNEDAQLSPLLRL 150
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = -1
Query: 729 FWGTAHAQLSEHVYWGLRTHWRALRDQLYRHADGRETISIEEFEKVAKATFPLKSEVDIK 550
F + + ++E Y GLRT L Q +H DGR+T SI++ + KA L++ +D+
Sbjct: 567 FHASNNKYMNESQYPGLRT---LLVVQRTKHDDGRKTSSIQKPSVLFKAFVCLRA-LDLS 622
Query: 549 N 547
N
Sbjct: 623 N 623
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 291 DHIRMERYIRWAFSDNTSDLNNIC 220
DH+ R + W + SDL NIC
Sbjct: 3497 DHLLKRRKLLWVIQEQASDLANIC 3520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,533,462
Number of Sequences: 37544
Number of extensions: 543832
Number of successful extensions: 1681
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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