Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d03
         (879 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051717-1|AAK93141.1|  638|Drosophila melanogaster LD24903p pro...    31   2.1  
AE014296-3624|AAF51786.1|  638|Drosophila melanogaster CG7414-PA...    31   2.1  
AE014297-3800|AAN14054.2|  881|Drosophila melanogaster CG31439-P...    31   2.8  
AF181652-1|AAD55437.1|  819|Drosophila melanogaster BcDNA.LD2358...    30   3.7  
AE014297-3378|AAF56178.1|  819|Drosophila melanogaster CG10221-P...    30   3.7  
BT025854-1|ABF85754.1| 1031|Drosophila melanogaster IP15264p pro...    30   4.8  
AE014298-1529|AAF47983.2| 2602|Drosophila melanogaster CG2174-PA...    30   4.8  
AE014298-1528|ABI30975.1| 2693|Drosophila melanogaster CG2174-PB...    30   4.8  
AE014298-611|AAF45929.2|  483|Drosophila melanogaster CG32774-PA...    30   4.8  
AE014296-337|AAF47553.2|  881|Drosophila melanogaster CG2086-PB,...    30   4.8  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   8.5  

>AY051717-1|AAK93141.1|  638|Drosophila melanogaster LD24903p
           protein.
          Length = 638

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 574 RERSFRNFLEFFNGNGLPAVSVSVQLVPQRAPVRPQAPVHVLAELRM-RGAPEQSH 738
           ++RS R  +   NG    A S   ++V Q APV  Q+PV V AE R  +  P Q +
Sbjct: 507 KQRSARKDVNVVNGGD--ADSAPTEVVDQAAPVARQSPVFVAAEERKPQHTPRQKY 560


>AE014296-3624|AAF51786.1|  638|Drosophila melanogaster CG7414-PA
           protein.
          Length = 638

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 574 RERSFRNFLEFFNGNGLPAVSVSVQLVPQRAPVRPQAPVHVLAELRM-RGAPEQSH 738
           ++RS R  +   NG    A S   ++V Q APV  Q+PV V AE R  +  P Q +
Sbjct: 507 KQRSARKDVNVVNGGD--ADSAPTEVVDQAAPVARQSPVFVAAEERKPQHTPRQKY 560


>AE014297-3800|AAN14054.2|  881|Drosophila melanogaster CG31439-PA
           protein.
          Length = 881

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = -2

Query: 878 ETTTHVPCPCRITSPSILKIGTSRLRS--EPNGRTTCALAPSSC*TTRRCDCSGAPRMRS 705
           +TTT  PC   ITS +     T+   +   P   TT +   ++  TT     +  P   +
Sbjct: 118 KTTTQTPCSGIITSTTTTPASTTTTTTTCTPTTTTTTSTTTTTTTTTTTTTTTCTPTTTT 177

Query: 704 SASTCTGACGRTGARCGTSCTDTLTAGRP 618
           + +T T     T     T+ T T T   P
Sbjct: 178 TTTTTTTTTTTTTTTTTTTTTTTTTTCTP 206



 Score = 29.1 bits (62), Expect = 8.5
 Identities = 22/83 (26%), Positives = 33/83 (39%)
 Frame = -2

Query: 875 TTTHVPCPCRITSPSILKIGTSRLRSEPNGRTTCALAPSSC*TTRRCDCSGAPRMRSSAS 696
           TTT   C    T+ +     T+   + P   TTC   P++  TT     +      ++ +
Sbjct: 484 TTTTTTCTPTTTTTTTTTTTTTTTTTTPTTTTTC--TPTTT-TTTTTTTTTTTTTTTTTT 540

Query: 695 TCTGACGRTGARCGTSCTDTLTA 627
           TCT     T     T+ T T TA
Sbjct: 541 TCTPTTTTTTTTTTTTTTTTTTA 563


>AF181652-1|AAD55437.1|  819|Drosophila melanogaster BcDNA.LD23587
           protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 858 MSMQDYVTKYFEDRYQQASVRAEWAYNLC-AGAEQLLDDPQVRLFWGTAHAQLSEHVYW 685
           M+  DY     ++ Y Q S+ AE  Y +  + A  LLD  +V +F       +    YW
Sbjct: 521 MAYSDYKNNRIDEAYMQYSLMAEMGYEVAQSNAAFLLDRKEVHVFNDRHEDLIRAFYYW 579


>AE014297-3378|AAF56178.1|  819|Drosophila melanogaster CG10221-PA
           protein.
          Length = 819

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 858 MSMQDYVTKYFEDRYQQASVRAEWAYNLC-AGAEQLLDDPQVRLFWGTAHAQLSEHVYW 685
           M+  DY     ++ Y Q S+ AE  Y +  + A  LLD  +V +F       +    YW
Sbjct: 521 MAYSDYKNNRIDEAYMQYSLMAEMGYEVAQSNAAFLLDRKEVHVFNDRHEDLIRAFYYW 579


>BT025854-1|ABF85754.1| 1031|Drosophila melanogaster IP15264p
           protein.
          Length = 1031

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 737 CDCSGAPRMRSSASTCTGACGRTGARCGTSC 645
           CDC           +CT A G TG RC   C
Sbjct: 492 CDCHNNAACNPQNGSCTCAAGWTGERCERKC 522


>AE014298-1529|AAF47983.2| 2602|Drosophila melanogaster CG2174-PA,
            isoform A protein.
          Length = 2602

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 855  SMQDYVTKYFEDRYQQASVRAEWAYNLCAGAEQLLDDPQVRLFWGTAHAQLSEH-VYWGL 679
            ++Q  VT + ++ ++++  +A    +    A Q L+ P  RL    AHAQ +EH V  G 
Sbjct: 1881 AIQSMVTTFVQE-FRKSQSKASTLSSGARAAAQTLNVPLERLESRQAHAQRNEHGVDGGS 1939

Query: 678  RTHWRALRDQLYRH 637
            R + +  + +L+ H
Sbjct: 1940 RQNEQLQQSELHHH 1953


>AE014298-1528|ABI30975.1| 2693|Drosophila melanogaster CG2174-PB,
            isoform B protein.
          Length = 2693

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -1

Query: 855  SMQDYVTKYFEDRYQQASVRAEWAYNLCAGAEQLLDDPQVRLFWGTAHAQLSEH-VYWGL 679
            ++Q  VT + ++ ++++  +A    +    A Q L+ P  RL    AHAQ +EH V  G 
Sbjct: 1972 AIQSMVTTFVQE-FRKSQSKASTLSSGARAAAQTLNVPLERLESRQAHAQRNEHGVDGGS 2030

Query: 678  RTHWRALRDQLYRH 637
            R + +  + +L+ H
Sbjct: 2031 RQNEQLQQSELHHH 2044


>AE014298-611|AAF45929.2|  483|Drosophila melanogaster CG32774-PA
           protein.
          Length = 483

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -2

Query: 875 TTTHVPCPCRITSPSILKIGTSRLRSEPNGRTTCALAPSSC*TTRRCDCSGAPRMRSS-A 699
           TTT  P P   T+P      T +  +    + T    P++  TT +   +    + ++ A
Sbjct: 290 TTTTTPLPTTTTTPLPTTTSTPQPTTTTTPQPTTTTVPTTTTTTTQASTTSQSEITTTPA 349

Query: 698 STCTGACGRTGARCGTSCTDTLT 630
            T +   G T    G++ T T T
Sbjct: 350 PTSSTEIGTTTTTAGSTTTSTTT 372


>AE014296-337|AAF47553.2|  881|Drosophila melanogaster CG2086-PB,
           isoform B protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 737 CDCSGAPRMRSSASTCTGACGRTGARCGTSC 645
           CDC           +CT A G TG RC   C
Sbjct: 350 CDCHNNAACNPQNGSCTCAAGWTGERCERKC 380


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -2

Query: 791  NGRTTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGAR--CGTSC 645
            +G T C L P  C     CD +GA      + T   ACG+  AR  C   C
Sbjct: 3314 DGLTGCQLPPERCHPDCECDENGAYCAPKCSRTEDCACGQQCARGKCRNKC 3364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,521,702
Number of Sequences: 53049
Number of extensions: 914879
Number of successful extensions: 3010
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)