Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15d03
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78411-4|CAB01645.2| 370|Caenorhabditis elegans Hypothetical pr... 31 0.82
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 31 0.82
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 31 1.1
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 31 1.4
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 31 1.4
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 3.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 3.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 3.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 3.3
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 29 4.4
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 4.4
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 4.4
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 4.4
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 4.4
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 29 4.4
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 29 4.4
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 29 5.8
>Z78411-4|CAB01645.2| 370|Caenorhabditis elegans Hypothetical
protein F02D8.3 protein.
Length = 370
Score = 31.5 bits (68), Expect = 0.82
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 669 WRALRDQLYRHADGRETISIEEFEKVAKATFPLKSEVDIKNLVDVVRKQLKLKINNQ 499
WR L+ G TI IE+ +K P+ E +I NLV++ RK+LK I ++
Sbjct: 296 WRESFISLWPQKTG--TIDIEDTKKQDPMIDPVFKEPNIDNLVEIKRKELKNHIRSK 350
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 31.5 bits (68), Expect = 0.82
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 788 GRTTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTS 648
G T C +C CD P + S CTG CG TG C S
Sbjct: 557 GCTNCCPVGQTCMNGGCCDLPSCPSGGFAISMCTGKCG-TGFECVNS 602
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = -1
Query: 633 DGRETISIEEFEKVAKATFPLKSEVDIKNLVDVVRKQLKLKINNQLICLDKLFYENEEGF 454
+ +ET+ EE K+ + LK E+D N + +Q + + L + ++NEE
Sbjct: 287 EDKETLQAEE-TKMVEEKMTLKLEIDSLNEENTRERQGRQNAEHSLQGVGDEIFKNEEEL 345
Query: 453 ERI--ELAKELYRQRRLAQDRYIRE 385
+ I E AK L + RL D I E
Sbjct: 346 DTIKPEYAKLLEEESRLKTDIRIDE 370
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 29/75 (38%)
Frame = -2
Query: 875 TTTHVPCPCRITSPSILKIGTSRLRSEPNGRTTCALAPSSC*TTRRCDCSGAPRMRSSAS 696
TTT P SP+ + + + TT AP + TT C+ S+ S
Sbjct: 484 TTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTTQAPPTT-TTSTSQCASW----SACS 538
Query: 695 TCTGACGRTGARCGT 651
G CG RCGT
Sbjct: 539 AQCGGCGTQSRRCGT 553
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/75 (29%), Positives = 29/75 (38%)
Frame = -2
Query: 875 TTTHVPCPCRITSPSILKIGTSRLRSEPNGRTTCALAPSSC*TTRRCDCSGAPRMRSSAS 696
TTT P SP+ + + + TT AP + TT C+ S+ S
Sbjct: 484 TTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTTQAPPTT-TTSTSQCASW----SACS 538
Query: 695 TCTGACGRTGARCGT 651
G CG RCGT
Sbjct: 539 AQCGGCGTQSRRCGT 553
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = -2
Query: 782 TTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTSCTD 639
++C++ ++ CDC TC G G RC C D
Sbjct: 149 SSCSVGTWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPD 196
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = -2
Query: 782 TTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTSCTD 639
++C++ ++ CDC TC G G RC C D
Sbjct: 149 SSCSVGTWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPD 196
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = -2
Query: 782 TTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTSCTD 639
++C++ ++ CDC TC G G RC C D
Sbjct: 149 SSCSVGTWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPD 196
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = -2
Query: 782 TTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTSCTD 639
++C++ ++ CDC TC G G RC C D
Sbjct: 149 SSCSVGTWGLGCSKSCDCENGANCDPELGTCICTSGFQGERCEKPCPD 196
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1119 AKERKEKSGKTPLRIVPEPTGTPL 1142
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1410 AKERKEKSGKTPLRIVPEPTGTPL 1433
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1425 AKERKEKSGKTPLRIVPEPTGTPL 1448
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1425 AKERKEKSGKTPLRIVPEPTGTPL 1448
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1119 AKERKEKSGKTPLRIVPEPTGTPL 1142
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1410 AKERKEKSGKTPLRIVPEPTGTPL 1433
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1425 AKERKEKSGKTPLRIVPEPTGTPL 1448
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 753 AAARRQRTGCTPIRLGPKPAGTYL 824
A R++++G TP+R+ P+P GT L
Sbjct: 1425 AKERKEKSGKTPLRIVPEPTGTPL 1448
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -2
Query: 794 PNGRTTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTSC 645
P+ +C T C+C G R C GR G+RC SC
Sbjct: 1452 PSCEQSCPSGKYGLNCTLDCECYGQARCDPVQGCCDCPPGRYGSRCQFSC 1501
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -2
Query: 794 PNGRTTCALAPSSC*TTRRCDCSGAPRMRSSASTCTGACGRTGARCGTSC 645
P+ +C T C+C G R C GR G+RC SC
Sbjct: 1452 PSCEQSCPSGKYGLNCTLDCECYGQARCDPVQGCCDCPPGRYGSRCQFSC 1501
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -1
Query: 681 LRTHWRALRDQLYRHADGRETISIEEFEKV-AKATFPLKSEVDIKNLVDVVRKQLKL 514
LR H++ R + Y+ G+E +EEF K+ ++ L VD +++++ R+ + L
Sbjct: 632 LRRHYKPDRSEGYQKFQGKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 688
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -1
Query: 681 LRTHWRALRDQLYRHADGRETISIEEFEKV-AKATFPLKSEVDIKNLVDVVRKQLKL 514
LR H++ R + Y+ G+E +EEF K+ ++ L VD +++++ R+ + L
Sbjct: 631 LRRHYKPDRSEGYQKFQGKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 687
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = -2
Query: 872 TTHVPCPCRITSPSILKIGTSRLRSEPNG----RTTCALAPSSC*TTRRCDCSGAPRMRS 705
TT P I S+ G + +PNG ++ P +C + C P +
Sbjct: 427 TTSGTGPGNIAETSVT-CGDDVIWQDPNGIRGNTLIASITPQTCLPCQTCTAFTDPMVPE 485
Query: 704 SASTCTGACGRTGARCGT 651
+ TCT G TGA C T
Sbjct: 486 A--TCTVTVGMTGAGCAT 501
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,308,612
Number of Sequences: 27780
Number of extensions: 451453
Number of successful extensions: 1539
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -