Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15d03
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.70 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.70 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   4.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 861 PMSMQDYVTKYFEDRYQ 811
           P  M+  +T+YFE RYQ
Sbjct: 405 PREMRQRITEYFEHRYQ 421


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 861 PMSMQDYVTKYFEDRYQ 811
           P  M+  +T+YFE RYQ
Sbjct: 373 PREMRQRITEYFEHRYQ 389


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 693 VYWGLRTHWRALRDQLYRH 637
           V+WG    W   R Q Y H
Sbjct: 167 VFWGSAWQWNEERKQYYLH 185


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 437 PRSCTDSGGLLRTG 396
           P++C DSG +  TG
Sbjct: 315 PKNCADSGSIWETG 328


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 406 SKPPLSVQLLGQFYSLEAFFVLIEKFVQAYKLVVDLQ 516
           +KPP  VQL   F +++  + ++E +V    L+  +Q
Sbjct: 42  TKPPFLVQLHSCFQTMDRLYFVME-YVNGGDLMYQIQ 77


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
 Frame = -1

Query: 774 CAGAEQ---LLDDPQVRLFWG 721
           C G +Q   LL+ PQ+ L WG
Sbjct: 168 CTGYQQYLRLLEVPQINLEWG 188


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 409 KPPLSVQLLGQFYSLEAFFVLIEKFVQAYKLVVDL 513
           K  LS+ +L    SL  FF+L+ + +    LVV L
Sbjct: 275 KVTLSISIL---ISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 409 KPPLSVQLLGQFYSLEAFFVLIEKFVQAYKLVVDL 513
           K  LS+ +L    SL  FF+L+ + +    LVV L
Sbjct: 275 KVTLSISIL---ISLHVFFLLVVEIIPPTSLVVPL 306


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 731 CSGAPRMRSSASTCTGACGRTGARC 657
           CSG P +R   ++    CG +  +C
Sbjct: 22  CSGYPSIRQGTTSYCLGCGDSCHKC 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,968
Number of Sequences: 438
Number of extensions: 5466
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)