Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c24
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431...    31   1.2  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    28   8.6  

>05_07_0064 +
           27440520-27440942,27442387-27442998,27443109-27443175,
           27443271-27443362,27443493-27443708,27443869-27444006,
           27444325-27444474
          Length = 565

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 457 YYLLRKYGSQEQKRTRIEIEILLQSLESNLLRITKIHILAFINSKNKNSI 606
           YY  ++  +  +KRTR +   +  +L  N+ +   +H+LA + + NKN++
Sbjct: 362 YYFRKENDTNSEKRTRRKHIRVRSALLVNIRKTPGLHVLAEMMNSNKNNV 411


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 551 ALQKYIFSLLLIAKTRIAYCXSFSPKHXNTNLIFRK 658
           ALQKYI SL  I  + +    S+SPK  N +++  K
Sbjct: 287 ALQKYIGSLGGIGASGVGSSSSYSPKELNKDIMPEK 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,847
Number of Sequences: 37544
Number of extensions: 217106
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)