Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c24
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY652946-1|AAT73713.1|  708|Caenorhabditis elegans guanylate cyc...    30   1.9  
AF038609-4|AAU87824.1|  708|Caenorhabditis elegans Guanylyl cycl...    30   1.9  

>AY652946-1|AAT73713.1|  708|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 708

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 32/43 (74%)
 Frame = +1

Query: 460 YLLRKYGSQEQKRTRIEIEILLQSLESNLLRITKIHILAFINS 588
           YLLR+YG  E K+T +++  L+Q ++ + +++T  ++L+++N+
Sbjct: 250 YLLREYG-LENKKT-LKVSDLMQLVQPSDIQLTYKNVLSYLNT 290


>AF038609-4|AAU87824.1|  708|Caenorhabditis elegans Guanylyl cyclase
           protein 37 protein.
          Length = 708

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 32/43 (74%)
 Frame = +1

Query: 460 YLLRKYGSQEQKRTRIEIEILLQSLESNLLRITKIHILAFINS 588
           YLLR+YG  E K+T +++  L+Q ++ + +++T  ++L+++N+
Sbjct: 250 YLLREYG-LENKKT-LKVSDLMQLVQPSDIQLTYKNVLSYLNT 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,145
Number of Sequences: 27780
Number of extensions: 257231
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)