Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c19
(395 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 35 0.021
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 33 0.064
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 32 0.15
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.34
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_27495| Best HMM Match : VWA (HMM E-Value=0) 28 3.2
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22) 28 3.2
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 27 4.2
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05) 27 4.2
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 4.2
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 27 5.5
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4) 27 7.3
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18) 27 7.3
SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3) 26 9.6
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 26 9.6
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 35.5 bits (78), Expect = 0.016
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 320 CPPVCSPPDCRPICGPASPLLCQSSVPP 237
CP CSP CRP C PL+C S PP
Sbjct: 1669 CPATCSPDSCRPEC----PLICCSVCPP 1692
Score = 31.9 bits (69), Expect = 0.19
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 317 PPVCSPPDCRPICGPASPLLCQSSVPPTQRC 225
PPV P C C P P++C + P C
Sbjct: 1795 PPVVCPKSCETTCTPDCPVMCCKNSSPATEC 1825
Score = 26.2 bits (55), Expect = 9.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 320 CPPVCSPPDCRPIC 279
CP CSP C P C
Sbjct: 1402 CPSACSPSGCNPDC 1415
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 320 CPPVCSPPDCRPICGPASPLLCQSSVPPT 234
CP CS C+P C P+ C +PPT
Sbjct: 1517 CPVGCSEHSCKPEC-PSK--CCMKVLPPT 1542
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 326 GYCPPVCSPPDCRPIC 279
G CP C P +C+P C
Sbjct: 1456 GECPAGCLPSNCKPDC 1471
Score = 21.0 bits (42), Expect(2) = 2.0
Identities = 7/16 (43%), Positives = 8/16 (50%)
Frame = -1
Query: 302 PPDCRPICGPASPLLC 255
P DC C P P+ C
Sbjct: 1494 PSDCFESCKPNCPIKC 1509
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 35.1 bits (77), Expect = 0.021
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 323 YCPPVCSPPDCRPICGPASPLL--CQSSVPPTQRC 225
Y PP +P C P C P SP+ CQSS PT+ C
Sbjct: 285 YQPPPMAPMGCAPQCSPVSPMFMGCQSSC-PTRCC 318
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 33.5 bits (73), Expect = 0.064
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 326 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 237
G C P C+P C P+C ++ LL Q+ +PP
Sbjct: 302 GSCLPACAP-GCNPLCCSSTSLLHQNRIPP 330
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 329 MGYCPPVCSPPDCRPICGPASPLLCQSSVP 240
MGY + P C C P P+LC S P
Sbjct: 361 MGYKKSLPCPRSCDRYCKPNCPILCCRSNP 390
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 32.3 bits (70), Expect = 0.15
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 284 ICGPASPLLCQSSVPPTQRCY 222
+CG + LLC+ VPP RCY
Sbjct: 555 VCGESKCLLCKEMVPPDHRCY 575
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 31.5 bits (68), Expect = 0.26
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 317 PPVCSPPDCRPICGPASPLLCQSSVP 240
PP PP C P+C A+P C ++ P
Sbjct: 1518 PPAPPPPVCMPMCAVAAPAPCPAACP 1543
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 31.1 bits (67), Expect = 0.34
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 260 LCQSSVPPTQRCYPVNPCINIYSCYTQI 177
L ++ PP +RC P NPC++ CY +
Sbjct: 988 LYEAVFPPEKRCKPHNPCLHGGKCYETV 1015
>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 353 VYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINI 198
+Y+ K C PV + C P+ P+ S P C PVN C+N+
Sbjct: 112 IYREDKPVNNSCEPVNN--SCEPVNNSCEPVN-NSCEPVNNSCEPVNNCVNM 160
>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
Length = 1064
Score = 27.9 bits (59), Expect = 3.2
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -1
Query: 302 PPDCRPICGPASPLLCQSSVPPTQR 228
P C+P+ P P++C+ ++P R
Sbjct: 795 PGKCKPVESPVDPVICRGTLPNPSR 819
>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
Length = 649
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 132 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLCWW 242
K F+ ++ K S+ +H L+ + DAR R PL W+
Sbjct: 10 KAFVGNIDKDSVKIHWLTK---FFDARFVRFYPLAWY 43
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 314 PVCSPPDCRPICGPA--SPLLCQSSVPPTQRCYP 219
P+ +P+ GPA SP+ C ++VP C P
Sbjct: 764 PISRVSPFQPVTGPAAPSPVPCNTTVPSAVACVP 797
>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
Length = 241
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = -1
Query: 281 CGPASPLLCQSS-------VPPTQRCYPVNPCINIYSCYT 183
C P SP C S VP C+ NPC N SC T
Sbjct: 135 CVPGSPENCVSDAKWHQYVVPTKDECFTGNPCKNGGSCVT 174
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 302 PPDCRPICGPASPLLCQSSVPPTQRC 225
P DC C P C S+ PPT +C
Sbjct: 935 PSDCHFSCYPQCTPECCSTTPPTAQC 960
>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = -1
Query: 320 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 207
CP C P P+ P +P L + PP PC
Sbjct: 18 CPTPCYGPVPHPLLRPCAPPLATALSPPPATALCPTPC 55
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 20 K*LQNRQFQ--FCYPTSRVRCNENNILKRKPICFGKRNL*DIFKFTIE 157
K LQ R ++ F Y T R N N+ K IC GK N KF IE
Sbjct: 23 KRLQYRFYKPMFIYGTIRTTMNSNDDALNKKICSGKNN----HKFDIE 66
>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
Length = 576
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 299 PDCRPICGPASPLLCQSSVPPTQRCY-PVNPCIN 201
PD +CG +C+ VPP C+ PV ++
Sbjct: 182 PDKPHVCGEDQCSICKERVPPGHLCFMPVGEAVS 215
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 212 DLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNNPFF 334
D + T +L G ++++ +D+ PE R + P+F
Sbjct: 194 DFDEDTGILPKEDDGSDEDVEIEMADEEPEFLRADGDKPYF 234
>SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)
Length = 844
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 211 LASTYTAVTLKLCNAMDDFYSEFKNVLQVS 122
+A+ YT LK C DD Y + ++++S
Sbjct: 61 MAARYTKEALKACRTKDDIYHVLRLIVRLS 90
>SB_49426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = -2
Query: 286 RSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSEFKNVLQVSFPETD 107
+ +DLH R+ N +IL L TY + +L +D + + + ++ P +
Sbjct: 216 KQLDLHFRTLIIPPVTVRNHSILRGLDETYRVLNRQLTAQIDKIHGDIDAISELRMPRST 275
Query: 106 GFSFQ 92
+F+
Sbjct: 276 KRTFE 280
>SB_39622| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=5.3)
Length = 107
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -1
Query: 320 CPPVCSPPDCRPICGPASPLLC 255
CPP+C P C P P C
Sbjct: 81 CPPMCQPSAPNFSCAPGCPQRC 102
>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 132 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLCWWHAALA 257
K F + S I H L +DAR R+ PL W A +A
Sbjct: 896 KVFEGNSDSSGIVTHGLKYN---IDARFVRLNPLTWSSAGIA 934
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Frame = -1
Query: 308 CSPPDCRPIC-----GPAS-PLLCQSSVPPTQRCYPVNPCINIYSCY 186
C+PP +C GP PLL + PP P PC YS Y
Sbjct: 920 CAPPPATALCPTPCYGPVPHPLLRPCAPPPATALCPT-PCYGPYSPY 965
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 311 VCSPPD--CRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSCY 186
+C P D CRP + L S V T PV PC++ + Y
Sbjct: 348 LCRPSDTLCRPSKSVSDTLCRPSEVAVTPCVDPVTPCVDPVTPY 391
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 229 RCVGGTLLWQRSGDAGPQIGRQ 294
RC GG W+ GD+G G Q
Sbjct: 721 RCSGGMTRWRSEGDSGLVTGNQ 742
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 229 RCVGGTLLWQRSGDAGPQIGRQSGGEQTGG 318
+C G T ++ G G + G + GGE GG
Sbjct: 198 KCEGSTDEKKKEGGGGGEEGAKEGGESEGG 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,758,303
Number of Sequences: 59808
Number of extensions: 257814
Number of successful extensions: 738
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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