Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c15
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    25   0.89 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.8  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   8.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   8.3  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 203 WRSLRSPNTI*VWYSTRKVYLKYV 132
           W +L  PN +  WY T + ++K V
Sbjct: 28  WNTLLRPNFLDGWYQTLQTHMKKV 51



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 781 HIFTINADKYTAADDD 734
           H+ TIN   YT   DD
Sbjct: 89  HVVTINETTYTDGSDD 104


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
          receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 99 FCMNQDNHFTRALIVNFD 46
          + +NQ  HF RA + N D
Sbjct: 30 YALNQSLHFVRASLSNLD 47


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 99  FCMNQDNHFTRALIVNFD 46
           + +NQ  HF RA + N D
Sbjct: 120 YALNQSLHFVRASLSNLD 137


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 781 HIFTINADKYTAADDD 734
           H+ TIN   YT   DD
Sbjct: 137 HVVTINETTYTDGSDD 152


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 781 HIFTINADKYTAADDD 734
           H+ TIN   YT   DD
Sbjct: 137 HVVTINETTYTDGSDD 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,358
Number of Sequences: 438
Number of extensions: 5038
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)