Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c14
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 30 0.44
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.3
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 27 3.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.1
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 27 4.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 5.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz... 25 9.5
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 9.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.5
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 29.9 bits (64), Expect = 0.44
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = -1
Query: 508 GYFAFDLLWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQL 329
GYF +DL Y + V H A + V ++ + Y + T E++ P L +
Sbjct: 126 GYFVWDLYITVRYVHITGIGFVIHAIAALFVITFSYRPYL-MYYGPTYLSWELSTPFLNI 184
Query: 328 RWFLKSNGYAKTVLYTMVEVTYLVTFLFVR 239
+FL + + +VTF+ VR
Sbjct: 185 HYFLDKTNRTGSKFQMINGFILIVTFICVR 214
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 28.3 bits (60), Expect = 1.3
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Frame = -1
Query: 580 EAITPCRLTMKTTPWHYALMLWSWGYFAFDLLWCFVYWGDHYLMLVHHTS------ALVA 419
EA K PW+ +W + L C V G +L H T+ + A
Sbjct: 69 EAFNEKAAEKKLLPWYRRYFIWILIFIV--ALICSVLIGVLGGVLGHRTAVRDRHPSYKA 126
Query: 418 VTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFLKSNGYAK 296
T K+Y G TF F+ +T+P +L N AK
Sbjct: 127 KTYSLVKEYKGTTFFDGFDFMNITDPTHGFVQYLDRNSSAK 167
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -1
Query: 160 VFYIVSVAF-IYDIVGYVLYRYKPKIVRRFQTFL 62
+F+I+S F ++ + VL+ Y PK +RF+ FL
Sbjct: 471 LFFILSFIFCLFFLFSLVLFGYDPKRRQRFKKFL 504
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 395 LYRLHVCLHAGVFRSHQSPTATTMVFKKQWLCQNRSLHY 279
++ LH LH+ VF S + P+ +F+ C N+ L Y
Sbjct: 95 VFHLHK-LHSAVFTSRRDPSFADDLFESSKPCLNQLLSY 132
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 401 LCVYSNSNQSASVMNEHQIVIAPVHEAPQ 487
LC Y+NS Q ++N Q + A + EA Q
Sbjct: 185 LCEYNNSTQFKELVNSSQDIAAVIVEAMQ 213
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -3
Query: 590 MRSRSYNAMPTYHEDNAVALRSNAMVLGLLRIRPSV 483
M +SY P + N+ L++++ G +RP+V
Sbjct: 276 MAHQSYGTSPAFANGNSPTLKNDSSFFGSASVRPTV 311
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 392 IVFLCVYSNSNQSASVMNEHQIVIAPV 472
+VFLC YSN Q+ +V + V+ V
Sbjct: 1670 LVFLCAYSNEQQTQAVDEIRREVLTSV 1696
>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 619 SVATVVGLYQCGAEAITPCRLTMKTTPW--HYALMLWSWGYFAFDLLWCFVYWG 464
+V +V+ L C A T R K TP + S G F + C+VYWG
Sbjct: 108 AVMSVLLLSWCDTTASTVGRKWGKYTPKIAKNKSLAGSLGAFVCGVFCCYVYWG 161
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 413 CIHTKRLYRLHVCLHAGVFRSHQSPTATTMVF 318
C+ T R L V AG F + SP T +VF
Sbjct: 160 CVRTSRPVYLAVPSDAGYFYTDASPLKTPLVF 191
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 2 TYLVQYENHRCSFKINSACSKKCLKPSYDFW 94
T+ +N N+ C + CLK YD W
Sbjct: 3848 THASNIQNFCTEVLANTHCEEDCLKLLYDLW 3878
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,939
Number of Sequences: 5004
Number of extensions: 71432
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -