Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15c14
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1119 + 8882481-8882687,8882793-8882933,8883024-8883143,888... 58 1e-08
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 56 3e-08
05_06_0039 + 25113409-25113522,25113827-25113915,25114013-251141... 56 4e-08
01_06_1132 - 34769800-34769955,34770098-34770157,34770259-347703... 54 1e-07
05_05_0268 + 23720837-23720914,23722398-23722486,23722669-237228... 48 1e-05
01_06_0843 - 32374830-32374958,32375407-32375482,32375572-323756... 45 8e-05
05_03_0395 + 13473159-13473929 36 0.049
12_01_0845 + 7918638-7919423 30 2.5
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 30 2.5
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397 29 3.2
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 29 4.3
03_05_0773 + 27612237-27612330,27612426-27612523,27612605-276127... 29 4.3
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 29 4.3
01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167 29 5.7
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 28 7.5
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 28 7.5
12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694... 28 9.9
03_06_0502 - 34384285-34384503,34384595-34384755,34384854-343849... 28 9.9
>01_01_1119 +
8882481-8882687,8882793-8882933,8883024-8883143,
8883789-8883884,8884076-8884189
Length = 225
Score = 57.6 bits (133), Expect = 1e-08
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 2/178 (1%)
Frame = -1
Query: 721 LISFVTWSWLYLWFARDG--NKSPEWCSRAVTLLHGSVATVVGLYQCGAEAITPCRLTMK 548
++S V + W AR +S ++C+RAV+ H + A + + L
Sbjct: 5 VVSGVAFWWTAFLLARGAFPKRSYDFCNRAVSAAHAAAAVSLACLSVADWSRPLSPLAAA 64
Query: 547 TTPWHYALMLWSWGYFAFDLLWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACT 368
++P + + Y +D C++ VHH ++V + G +
Sbjct: 65 SSPPQMKALAVTLSYMVYDAACCYLNDDVRVDNTVHHLVSIVGIAAGLAYRRCGTEMVAS 124
Query: 367 LAFLEVTNPLLQLRWFLKSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILKSD 194
L E+++PLL LR LK G T L +V++ + V F R G Y+ + +D
Sbjct: 125 LFVTEISSPLLHLREILKEFGIKDTDLNLLVDILFAVIFSVARMGFGPYLTYVTVTAD 182
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 56.0 bits (129), Expect = 3e-08
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Frame = -1
Query: 514 SWGYFAFDLLWCFVYWGDHYLM--LVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNP 341
S GYF DL F + M +VHHT +LVA+ YT G + + E T P
Sbjct: 73 SVGYFIADLAMIFWLYPSLGGMEYIVHHTLSLVAIA-YTMLSGEGQFYTYMVLISETTTP 131
Query: 340 LLQLRWFLKSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRIL--KSDIFDVDEKLI 167
+ LRWFL + G K+ Y + + V +L R +L Y+ I S + +
Sbjct: 132 EINLRWFLDTAGLKKSSAYLVNGILMFVAWLVARILLFIYVFYHIYLHYSQVMQMHAFGY 191
Query: 166 SLVFYIVSVAFIYDIVGYV 110
L F + SV F+ + + ++
Sbjct: 192 YLTFIVPSVLFVMNTMWFM 210
>05_06_0039 +
25113409-25113522,25113827-25113915,25114013-25114148,
25114231-25114305,25114456-25114577,25114680-25114755,
25115242-25115301,25115383-25115511
Length = 266
Score = 55.6 bits (128), Expect = 4e-08
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Frame = -1
Query: 655 EWCSRAVTLLHGSVATVVGLYQCGAEAITPCR----LTMKTTPWHYALMLWSWGYFAFDL 488
EW +R ++ +H T++ Y + + +T +++ + S GYF DL
Sbjct: 64 EWNNRGMSTVHAIFITLMSAYLVFFSGLFSDQQDGPVTFRSSSLSNFTLGVSVGYFIADL 123
Query: 487 ---LWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFL 317
LW + G LVHH +L AVT YT G + E T P + LRWFL
Sbjct: 124 AMILWFYPSLGGMEY-LVHHVLSLTAVT-YTMLSGEGQLYTYMSLISETTTPGINLRWFL 181
Query: 316 KSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRIL--KSDIFDVDEKLISLVFYIVS 143
G ++ Y + V +T+L R IL Y+ +I I ++ LV + +
Sbjct: 182 DVAGMKRSKRYVVNGVAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYLLVCVVPA 241
Query: 142 VAFIYDIVGY--VLYRYKPKIVRR 77
+ F+ +++ + +L K + +R
Sbjct: 242 ILFVMNMIWFSKILRGLKKTLAKR 265
>01_06_1132 -
34769800-34769955,34770098-34770157,34770259-34770334,
34770412-34770533,34770634-34770708,34770899-34771025,
34771126-34771214,34773479-34773535,34773584-34773661
Length = 279
Score = 54.4 bits (125), Expect = 1e-07
Identities = 49/177 (27%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Frame = -1
Query: 664 KSPEWCSRAVTLLHGSVATVVGLYQCGAEAITPCRLTMKTTPWHYALMLW-SWGYFAFDL 488
K EW +R + H VA VV Y + + + W M S GYF DL
Sbjct: 68 KKVEWNNRGFSTFHALVAAVVSFYLVVISDLFHSNIIIDRNSWLSDAMFGVSIGYFLTDL 127
Query: 487 ---LWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFL 317
LW F G +L HH ++ A+ + L F E T P + LRW+L
Sbjct: 128 VMILWYFPSLGGKEYLL-HHGLSMYAICLALLSGKAHMYILMVL-FTEATTPFVNLRWYL 185
Query: 316 KSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILKSDIFDVDEKLISLVFYIV 146
+ G LY + V +L R IL Y + FD + + L FY +
Sbjct: 186 EVAGKKTHNLYLYNGLALFVGWLVARVILFIYFFTHMYFH--FDQVKSIFPLGFYSI 240
>05_05_0268 +
23720837-23720914,23722398-23722486,23722669-23722807,
23722899-23722973,23723069-23723190,23723287-23723362,
23723786-23723845,23723939-23724091
Length = 263
Score = 47.6 bits (108), Expect = 1e-05
Identities = 47/176 (26%), Positives = 66/176 (37%), Gaps = 8/176 (4%)
Frame = -1
Query: 655 EWCSRAVTLLHGSVATVVGLYQCGAEAI----TPCRLTMKTTPWHYALMLW-SWGYFAFD 491
EW +R + H VA VV Y + + + W M S GYF D
Sbjct: 52 EWNNRGFSTFHALVAAVVSFYLLVISDLFSKDVHGAIIIDRKSWMSDAMFGVSLGYFLTD 111
Query: 490 LL---WCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWF 320
LL W F G +L HH ++ A+++ G + + E T P + LRW+
Sbjct: 112 LLMILWHFPSLGGKEYLL-HHGLSMYAISLALLSG-KGHVYILMVLITEATTPFVNLRWY 169
Query: 319 LKSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILKSDIFDVDEKLISLVFY 152
L G + LY V +L R IL Y + FD + L FY
Sbjct: 170 LDLAGRKDSKLYLYNGVALFAGWLVARVILFVYFFAHVYLH--FDQVRTVFPLGFY 223
>01_06_0843 -
32374830-32374958,32375407-32375482,32375572-32375693,
32375834-32375908,32376007-32376142,32376223-32376311,
32377304-32377466,32379772-32379860,32379983-32380061,
32380195-32380240,32380718-32380801,32380919-32380982,
32381103-32381156,32381279-32381347,32381470-32381778
Length = 527
Score = 44.8 bits (101), Expect = 8e-05
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Frame = -1
Query: 655 EWCSRAVTLLHGSVATVVGLYQCGAEAITPCRL----TMKTTPWHYALMLWSWGYFAFDL 488
EW +R ++ +H T++ +Y + L T++++ + S GYF DL
Sbjct: 345 EWNNRGMSTVHAMFITLMSVYLVFFSNLFSDELDGPVTVRSSNLSNFTLGVSLGYFIADL 404
Query: 487 L---WCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFL 317
W + G +L HH +++++ VY G + + E T P + LRWFL
Sbjct: 405 AMLSWAYPSLGGMEYVL-HHLLSIISL-VYAIYSEEGQLYTYMVLISETTTPGINLRWFL 462
Query: 316 KSNGYAKTVLYTMVEVTYLVTFL 248
+ G ++ Y + VT V +L
Sbjct: 463 DTVGMKRSKAYLVNGVTMFVAWL 485
>05_03_0395 + 13473159-13473929
Length = 256
Score = 35.5 bits (78), Expect = 0.049
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Frame = -1
Query: 517 WSWGYFAFDLLWCFVYWGDHYLMLVHHTSAL-VAVTVYTQKDYTGCTFACTLAFLEVTNP 341
+S YF DLL + L + HH + L V VT + L EVT+
Sbjct: 93 YSVAYFTMDLLHYLAFLPGDTLFIAHHVATLFVFVTCRYLVRHGAYALLVLLVLAEVTS- 151
Query: 340 LLQLRWFL----KSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILKSDIFDVDEK 173
LLQ W L ++ A +Y + + + VRG+ G + LK +F + +
Sbjct: 152 LLQNVWTLAGIWRAEKPAAARVYRALSPPFYFIYTVVRGVAGP---LFFLKMSLFYLSGQ 208
Query: 172 LISLVFYIVSVAFIYDIVG 116
+ ++ + V +++I +VG
Sbjct: 209 AVDVIPWWVRISWIV-VVG 226
>12_01_0845 + 7918638-7919423
Length = 261
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 4/110 (3%)
Frame = -1
Query: 517 WSWGYFAFDLLWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPL 338
+S YFA DL V L + HH + L + G + L L
Sbjct: 93 FSTAYFAVDLAHYLVLLPGERLFVAHHLATLYVLATCRAAARRGACALLVMEVLAEATSL 152
Query: 337 LQLRWFL----KSNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILK 200
Q W L ++ A + + + + + +R +LG +R+++
Sbjct: 153 AQNLWTLAGMRRAGSPAAAAAHARLSLPFYAAYTAMRAVLGPAWFVRMVR 202
>01_06_1818 - 40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 669 VTKAQSGAQGQ*PSCTEAL-LQSSVYINAEQK 577
VTKA SG Q P C A QS VY N E+K
Sbjct: 992 VTKAASGMDWQRPLCKTAYWFQSRVYTNMEEK 1023
>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
Length = 851
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 193 IFDVDEKLISLVFYIVSVAFIYDIVGYVLYRYKPKIVRR 77
+ K + FY S AF +V VL RYKP + RR
Sbjct: 400 LLSTQAKRYKVFFYCNSTAFAASLVVIVLVRYKPLLRRR 438
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 202 KSDIFDVDEKLISLVFYIVSVAFIYDIVGYVLYRYKPKIVR 80
K + K + FY S AF+ +V +L RYKP + R
Sbjct: 409 KPILMSTQAKRYKVFFYCNSTAFVASLVIIILVRYKPLLKR 449
>03_05_0773 +
27612237-27612330,27612426-27612523,27612605-27612781,
27612869-27612969,27613079-27613154,27613255-27613314,
27613412-27613596,27613669-27613807,27614229-27614315,
27614939-27615127,27615243-27615461
Length = 474
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 517 WSWGYFAFDLLWCFVYWGDHYLMLVHHTSALVAVTVY 407
+ WGY F CFV ++ L+ T L+AVT Y
Sbjct: 285 FQWGYPIFFADDCFVMIAASFVSLIESTGTLMAVTRY 321
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -1
Query: 757 LGPELSTASLLKLISFVTWSWLYLWFAR---DGNKSPEWCSRAVTLLHGSV 614
+ P + A L+KLI + WS +YL + D N W S + LL V
Sbjct: 159 VNPPIEVADLIKLICKIFWSSIYLEIPKQLFDPNVFNAWMSLFINLLERPV 209
>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
Length = 314
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -1
Query: 532 YALMLWSWGYFAF---DLLWCFVYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLA 362
Y+ + +S GYFA+ D+L +Y G +L+HH L+ T+ ++ T TL
Sbjct: 153 YSALCFSCGYFAYDQLDMLRYRLYSGRIPGILMHHLILLICFTLALYRNVTINYLILTLV 212
Query: 361 FLEVTNPLLQLRWFLKSNGY 302
E+ + L +R + G+
Sbjct: 213 -CELHSVFLHIRKLRRMAGF 231
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 157 FYIVSVAFIYDIVGYVLYRYKPKIVRRFQTF 65
FY S+AF +V +L +YKP + RR F
Sbjct: 254 FYCNSMAFAASLVIIILVQYKPMLKRRILQF 284
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -1
Query: 631 LLHGSVATVVGLYQCGAEAITPCRLTMKTTP-WHYALMLWSWGYFAFDLLWCF--VYWGD 461
++HGS T VG GA+ C+ T K+ W + ++ F D++ C +Y G
Sbjct: 114 VIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGIQVHIFLGVLFVLDVV-CIPCIYKGR 172
Query: 460 HYLML 446
H LML
Sbjct: 173 HELML 177
>12_02_1149 -
26467252-26468319,26468452-26469147,26469263-26469409,
26470936-26471274
Length = 749
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 475 VYWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAF 359
V W DH+ +L A + ++ Y GC+ A L F
Sbjct: 574 VSWNDHFFVLKVEAGAYYIIDTLGERLYEGCSQAYILKF 612
>03_06_0502 -
34384285-34384503,34384595-34384755,34384854-34384931,
34385444-34385595,34385645-34385703,34385808-34385894,
34385990-34386086,34386232-34386416,34386494-34386553,
34386640-34386715,34386824-34386924,34387039-34387215,
34387302-34387399,34387505-34387604
Length = 549
Score = 27.9 bits (59), Expect = 9.9
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Frame = -1
Query: 646 SRAVTLLHGSVATVVGLYQCGAEAIT-PCRLTMKT----TPWHYALMLWSWGYFAFDLLW 482
S A+ L+ TV G Y+ A CR PW + WG FD
Sbjct: 225 SVALVWLYAFFLTVGGAYKNAAPKTQFHCRTDRSGLVGGAPWISVPYPFQWGAPTFDAGE 284
Query: 481 CFVYWGDHYLMLVHHTSALVAVTVY 407
F ++ LV T A +AV+ Y
Sbjct: 285 AFAMMAASFVALVESTGAFIAVSRY 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,334,563
Number of Sequences: 37544
Number of extensions: 458487
Number of successful extensions: 1215
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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