Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c14
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    32   0.41 
AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    32   0.55 
AF039053-7|AAC25873.3|  295|Caenorhabditis elegans Serpentine re...    31   0.96 
AC025721-12|AAK29899.1|  278|Caenorhabditis elegans Hypothetical...    31   0.96 
Z82259-7|CAB97265.1|  353|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 404 TKRLYRLHVCLHAGVFRSHQSPTATTMVFKKQWLCQNRSLHYGGGDISCDVPVCER 237
           T++L + H   H G  RSH  P      F+K  L Q+  +H GG    C  P C +
Sbjct: 78  TRQLLKKHWMWHTGE-RSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHEC--PQCHK 130


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 404 TKRLYRLHVCLHAGVFRSHQSPTATTMVFKKQWLCQNRSLHYGGGDISCDVPVCER 237
           T++L + H   H G  RSH  P      F+K  L Q+  +H GG    C  P C +
Sbjct: 127 TRQLLKKHWMWHTGE-RSHVCPHCNKAFFQKGHLTQHLMIHSGGRPHEC--PQCHK 179


>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = -1

Query: 472 YWGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPLLQLRWFLKSNGYAKT 293
           Y+  HY  L       + + +     + G TF  + A LE+  PL + +WF + N  A+T
Sbjct: 114 YYILHYSALTRLKLVKIVLLILIPSLFQGLTFWTSFAPLEIILPLAK-KWFPQYNFEAET 172

Query: 292 -VLYTMVEVTY----LVTFLFVRGILGTYIMMRILKSDI 191
            VL  +V++T+       F     I   YI + IL+  I
Sbjct: 173 GVLTGIVDITHWAATYAVFNICLPIFPIYIAIFILRQKI 211


>AF039053-7|AAC25873.3|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 22 protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
 Frame = -1

Query: 460 HYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFLEVTNPL-LQLRWFLKSNGYAKTVLY 284
           HY  L+ +++ L  +  Y   DY    F C   F+  T+ + L     L S+ Y  T   
Sbjct: 114 HYRPLISNSAILSLIIGYGLFDYLIMYFFCDFEFVIPTSCVTLTCSMNLCSSQYWATSKS 173

Query: 283 TMVEVTYLVTFLFVRGILGTYIMMRILKSDIFDVDEKLISLVFYIVSVAFIYDIVGYVLY 104
            ++ +T+     F   IL   ++ +++K    D++ K   L     ++ F++DI+  ++ 
Sbjct: 174 VIIWLTF-----FFAIILSMKLLWKVIKEKNKDLN-KANRLALIDTAIIFLFDILSNIVI 227

Query: 103 RY 98
            Y
Sbjct: 228 HY 229


>AC025721-12|AAK29899.1|  278|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.13 protein.
          Length = 278

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 15/173 (8%)
 Frame = -1

Query: 664 KSPEWCSRAVTLLHGSVAT----VVGLYQCGAEAITPCRLTMKTTPWHYA----LMLWSW 509
           K PEW      L    V +    +V    C    +T      +   +H A    + L+S 
Sbjct: 28  KQPEWSDNKTRLFAVRVVSFTHALVSALGCIFSLLTDVNYVREPYDYHKANAEYVFLFSM 87

Query: 508 GYFAFDLLWCFVY--WGDHYLMLVHHTSALVAVTVYTQKDYTGCTFACTLAFL--EVTNP 341
           GYF +DLL   ++         L+HH+  + A ++      +G  F   +  L  E+   
Sbjct: 88  GYFIYDLLDMHIHGELESSKEYLIHHSLVITAFSIIL---LSGRLFGLAMIALLVEIQTV 144

Query: 340 LLQLRWFLK---SNGYAKTVLYTMVEVTYLVTFLFVRGILGTYIMMRILKSDI 191
            L LR  ++    + +    +  ++    +  FLF R +   Y++  ++  D+
Sbjct: 145 FLHLRTMVRLLYGSKHMPASIDVLINANMICLFLF-RHLPVCYLLFYLIAQDV 196


>Z82259-7|CAB97265.1|  353|Caenorhabditis elegans Hypothetical
           protein C28D4.8 protein.
          Length = 353

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   YLVQYENHRCSFKINSA-CSKKCLKPSYDFWFVSV*NVADNVINKSH 142
           Y+  Y N R +FK N     +K  K SY FW V +    + ++  SH
Sbjct: 57  YMKVYGNQRLNFKRNDIDIWRKSFKDSYSFWLVCL-KGTNKIVQMSH 102


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 641 GSDP-PARKRCYSRRFISMRSRSYNAMPTYHED 546
           GS P  +R+R  SRR+   + + YN MP  H D
Sbjct: 363 GSIPRSSRERTASRRYREQQQQIYNQMPQNHND 395


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 641 GSDP-PARKRCYSRRFISMRSRSYNAMPTYHED 546
           GS P  +R+R  SRR+   + + YN MP  H D
Sbjct: 363 GSIPRSSRERTASRRYREQQQQIYNQMPQNHND 395


>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
           protein C09H5.2b protein.
          Length = 1039

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 193 IFDVDEKLISLV-FYIVSVAFIYDIVGYVLYRYKPKIVRRFQTFLRT-CRV 47
           I+D  + L   V  +IV++ FI  +V +   +   ++VR FQT + T C+V
Sbjct: 120 IYDPTDALNLYVGIFIVAIVFIMCVVSFFEEKKGVEVVRAFQTLMPTSCQV 170


>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
           protein C09H5.2a protein.
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -1

Query: 193 IFDVDEKLISLV-FYIVSVAFIYDIVGYVLYRYKPKIVRRFQTFLRT-CRV 47
           I+D  + L   V  +IV++ FI  +V +   +   ++VR FQT + T C+V
Sbjct: 120 IYDPTDALNLYVGIFIVAIVFIMCVVSFFEEKKGVEVVRAFQTLMPTSCQV 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,111
Number of Sequences: 27780
Number of extensions: 406806
Number of successful extensions: 1062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)