Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15c12
         (139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   2.4  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    24   3.2  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          23   5.5  
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    22   9.6  

>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 94  KSLHQHIQLLHSNYVTQW 41
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = -1

Query: 100 SCKSLHQHIQLLHSNYVTQWTISIVNLKMV 11
           + KSL  H++ +  N++ +W + +++++ V
Sbjct: 89  AAKSLITHLEEIKVNFMREWELKMISVEGV 118


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 139 PLPEQRATNTTVLSCKSLHQHIQ 71
           PLPE+  +   +  C  L+ H+Q
Sbjct: 395 PLPEEEMSKLHIERCARLYPHMQ 417


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 88  RIYRIAPLCWWHAALAK 138
           R Y   PLC WH + A+
Sbjct: 102 RTYLEVPLCRWHISQAR 118


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 83  STYTAVTLKLCNAMDDFYS 27
           +TY  +TL LCNA   +++
Sbjct: 365 ATYMNITLMLCNACGIYWT 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,595
Number of Sequences: 5004
Number of extensions: 7379
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)